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自然脊椎动物种群进化生理学的分子与细胞研究:个体变异和遗传成分对采样与测量的影响

Molecular and cellular studies in evolutionary physiology of natural vertebrate populations: influences of individual variation and genetic components on sampling and measurements.

作者信息

Nikinmaa Mikko, Waser Wolfgang

机构信息

Centre of Excellence in Evolutionary Genetics and Physiology, Department of Biology, Turku, Finland.

出版信息

J Exp Biol. 2007 Jun;210(Pt 11):1847-57. doi: 10.1242/jeb.002717.

DOI:10.1242/jeb.002717
PMID:17515411
Abstract

Studies combining ecological, genetic and physiological approaches are needed in evolutionary biology. Although the combination of approaches has been emphasized, such studies have been rare with regard to molecular and cellular studies on natural vertebrate populations. The major reasons for this are that the generation time of vertebrates is long and it is difficult to find a molecular or cell physiological measurement that is both relevant for the fitness of the population and can be repeated an adequate number of times to enable estimations of individual variability. The paucity of suitable physiological parameters is partly due to the fact that most physiological studies have not been directed towards understanding the behaviour of populations but towards understanding the basic mechanisms of the function of individuals. Also, physiological measurements that appear most relevant from the point of view of evolutionary studies are often integrative functions, composed of the function of many genes. When dissecting the integrative functions into components, it is often observed that the same integrative response can be achieved via different routes, i.e. changes in the responses of different genes. To enable cellular and molecular physiological studies to be increasingly combined with ecological and genetic studies, it is important that such studies include and report individual variability and that the sample size is increased. In addition, more sophisticated statistical methods should be used than is traditionally done, and when the function of most genes in the integrative response are not known, techniques such as QTL mapping should be used. Hitherto in vertebrates, the methodology has mainly been used in production biology (e.g. meat or milk production). With regard to combining genomic and physiological studies, one must bear in mind that the massive datasets associated with genomic studies need to be further enlarged to enable estimates of individual variation. It is also important to remember that microarray and proteomic data give the levels of mRNA and proteins, respectively. Since the function of the protein can be regulated independently of its transcription or its level in the cell, direct physiological measurements are also needed if estimations of protein activity in the individuals of a population are wanted.

摘要

进化生物学需要结合生态、遗传和生理学方法的研究。尽管人们一直强调方法的结合,但对于自然脊椎动物种群的分子和细胞研究而言,这类研究却很少见。主要原因在于脊椎动物的世代时间长,而且很难找到一种既与种群适应性相关又能重复足够次数以估算个体变异性的分子或细胞生理学测量方法。合适的生理参数匮乏,部分原因是大多数生理学研究并非旨在理解种群行为,而是旨在理解个体功能的基本机制。此外,从进化研究角度看似最相关的生理学测量通常是整合功能,由许多基因的功能组成。在将整合功能分解为各个组成部分时,经常会观察到相同的整合反应可以通过不同途径实现,即不同基因反应的变化。为了使细胞和分子生理学研究能够越来越多地与生态和遗传研究相结合,重要的是这类研究要纳入并报告个体变异性,并且增加样本量。此外,应该使用比传统方法更复杂的统计方法,当整合反应中大多数基因的功能未知时,应使用诸如数量性状位点(QTL)定位等技术。迄今为止,在脊椎动物中,该方法主要用于生产生物学(如肉类或奶类生产)。关于基因组学和生理学研究的结合,必须牢记与基因组学研究相关的大量数据集需要进一步扩充,以便能够估算个体变异。同样重要的是要记住,微阵列和蛋白质组学数据分别给出mRNA和蛋白质的水平。由于蛋白质的功能可以独立于其转录或细胞内水平进行调节,如果想要估算种群个体中蛋白质的活性,还需要进行直接的生理学测量。

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