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基于ABO、Rh血型系统和九个短串联重复序列对委内瑞拉两个地区的混合估计。

Admixture estimates based on ABO, Rh and nine STRs in two Venezuelan regions.

作者信息

Simmons Alexandra D, Rodriguez-Arroyo Greta, Rodriguez-Larralde Alvaro

机构信息

Laboratorio de Genética Humana, IVIC, Apartado 21827, Caracas 1020-A, Venezuela.

出版信息

Ann Hum Biol. 2007 Jan-Feb;34(1):56-67. doi: 10.1080/03014460601075736.

Abstract

BACKGROUND

The Venezuelan population is the product of Native American, African and European admixture. Few admixture studies have been made in Venezuela using short tandem repeats (STRs).

AIM

The study estimated the contribution of each parental group in two Venezuelan regions: the Northern-Central and the Central-Western Regions.

SUBJECTS AND METHODS

Frequencies for ABO and Rh were estimated by maximum likelihood, and by direct count for nine STRs, for 211 individuals. Admixture was estimated using Chakraborty's gene identity method. Neighbour-joining dendrograms were obtained with Nei's DS distance calculated between the two regions, the parental populations and other Venezuelan and Latin American populations. A principal component analysis (PCA) was also performed.

RESULTS

For the Northern-Central Region, the estimate of admixture was 37.7% for the European component, 37.7% for the African and 24.6% for the Native American. For the Central-Western region, the estimate of admixture was 58.5% for the European, 16.5% for the African and 25.0% for the Native American component.

CONCLUSIONS

(i) All systems were in Hardy-Weinberg equilibrium, except the Rh blood group of the Central-Western Region; (ii) the European contribution is high in both groups; (iii) in the dendrogram and PCA, the studied populations appear close to other admixed populations, and their relative position with regard to the three parental populations coincides with the admixture analysis.

摘要

背景

委内瑞拉人口是美洲原住民、非洲人和欧洲人混合的产物。在委内瑞拉,利用短串联重复序列(STR)进行的混合研究较少。

目的

本研究估计了两个委内瑞拉地区(中北部地区和中西部地区)每个亲本群体的贡献。

对象与方法

通过最大似然法估计ABO和Rh血型的频率,并直接计数211名个体的9个STR的频率。使用恰克拉波蒂(Chakraborty)的基因同一性方法估计混合情况。利用两个地区、亲本群体以及其他委内瑞拉和拉丁美洲群体之间计算的内氏(Nei)遗传距离获得邻接法聚类图。还进行了主成分分析(PCA)。

结果

对于中北部地区,欧洲成分的混合估计为37.7%,非洲成分的混合估计为37.7%,美洲原住民成分的混合估计为24.6%。对于中西部地区,欧洲成分的混合估计为58.5%,非洲成分的混合估计为16.5%,美洲原住民成分的混合估计为25.0%。

结论

(i)除中西部地区的Rh血型外,所有系统均处于哈迪-温伯格平衡;(ii)两个群体中欧洲成分的贡献都很高;(iii)在聚类图和主成分分析中,所研究的群体与其他混合群体相近,并且它们相对于三个亲本群体的相对位置与混合分析结果一致。

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