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[ERIC(IRU)的研究进展]

[Research progress of ERIC (IRU)].

作者信息

Lin Zhao-hong, Ni Xue-qin, Zeng Dong, Zhou Xiao-qiu

机构信息

College of Animal Science and Technology, Sichuan Agricultural University, Ya' an 625014, China.

出版信息

Wei Sheng Wu Xue Bao. 2007 Apr;47(2):370-3.

Abstract

Repeat sequence exists in almost all organism genomes. Enterobacterial Repetitive Intergenic Consensus (ERIC), also named Intergenic Repetitive Unit (IRU), is a kind of intergenic repetitive sequence that exists predominantly in Enterobacteria. ERIC (IRU) was firstly discovered in Escherichia coli, followed by identification in many other bacteria. ERIC (IRU) is 127 bp long, and some with inserted sequences. Most ERIC (IRU) can be transcribed, and mRNA forms a stem-loop structure. ERIC (IRU) is restricted to transcribed regions of the genome, either in intergenic regions of polycistronic operons or in untranslated regions upstream or downstream of open reading framesn (ORF). ERIC (IRU) probably modulates the expression of flanking genes. ERIC (IRU) is highly conserved, for either its variation is restricted by the natural selection pressure, or it's "selfish DNA". ERIC-PCR described by Versalovic et al. can efficiently analyze the variation of different ecological systems and monitor the development of microbial flora of the same ecological system. In recent years, this technology has been applied to study the microbial population of animal intestinal tract.

摘要

重复序列几乎存在于所有生物体的基因组中。肠杆菌重复基因间共有序列(ERIC),也称为基因间重复单元(IRU),是一种主要存在于肠杆菌中的基因间重复序列。ERIC(IRU)最初在大肠杆菌中被发现,随后在许多其他细菌中也得到了鉴定。ERIC(IRU)长度为127 bp,有些带有插入序列。大多数ERIC(IRU)可以被转录,其mRNA形成茎环结构。ERIC(IRU)局限于基因组的转录区域,要么存在于多顺反子操纵子的基因间区域,要么存在于开放阅读框(ORF)上游或下游的非翻译区域。ERIC(IRU)可能会调节侧翼基因的表达。ERIC(IRU)具有高度保守性,这可能是因为其变异受到自然选择压力的限制,或者它是“自私DNA”。Versalovic等人描述的ERIC-PCR能够有效地分析不同生态系统的变异情况,并监测同一生态系统中微生物群落的发展。近年来,这项技术已被应用于研究动物肠道中的微生物种群。

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