Lundström Patrik, Teilum Kaare, Carstensen Tommy, Bezsonova Irina, Wiesner Silke, Hansen D Flemming, Religa Tomasz L, Akke Mikael, Kay Lewis E
Department of Medical Genetics, The University of Toronto, Toronto, ON, Canada, M5S 1A8.
J Biomol NMR. 2007 Jul;38(3):199-212. doi: 10.1007/s10858-007-9158-6. Epub 2007 Jun 7.
A simple labeling approach is presented based on protein expression in [1-(13)C]- or [2-(13)C]-glucose containing media that produces molecules enriched at methyl carbon positions or backbone C(alpha) sites, respectively. All of the methyl groups, with the exception of Thr and Ile(delta1) are produced with isolated (13)C spins (i.e., no (13)C-(13)C one bond couplings), facilitating studies of dynamics through the use of spin-spin relaxation experiments without artifacts introduced by evolution due to large homonuclear scalar couplings. Carbon-alpha sites are labeled without concomitant labeling at C(beta) positions for 17 of the common 20 amino acids and there are no cases for which (13)C(alpha)-(13)CO spin pairs are observed. A large number of probes are thus available for the study of protein dynamics with the results obtained complimenting those from more traditional backbone (15)N studies. The utility of the labeling is established by recording (13)C R (1rho) and CPMG-based experiments on a number of different protein systems.
本文提出了一种基于蛋白质在含[1-(13)C]-或[2-(13)C]-葡萄糖培养基中表达的简单标记方法,该方法分别产生在甲基碳位置或主链C(α)位点富集的分子。除苏氨酸和异亮氨酸(δ1)外,所有甲基均由孤立的(13)C自旋产生(即不存在(13)C-(13)C一键耦合),这有利于通过自旋-自旋弛豫实验研究动力学,而不会因大的同核标量耦合导致的演化引入伪影。对于20种常见氨基酸中的17种,碳α位点被标记,而C(β)位置没有伴随标记,并且没有观察到(13)C(α)-(13)CO自旋对的情况。因此,有大量探针可用于研究蛋白质动力学,所得结果补充了来自更传统的主链(15)N研究的结果。通过在许多不同的蛋白质系统上记录(13)C R(1ρ)和基于CPMG的实验,确定了标记的实用性。