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一种针对血液铝问题的系统生物学方法:一个计算模型的应用与测试

A systems biology approach to the blood-aluminium problem: the application and testing of a computational model.

作者信息

Beardmore James, Rugg Gordon, Exley Christopher

机构信息

Birchall Centre for Inorganic Chemistry and Materials Science, Lennard-Jones Laboratories, Keele University, Staffordshire ST5 5BG, UK.

出版信息

J Inorg Biochem. 2007 Sep;101(9):1187-91. doi: 10.1016/j.jinorgbio.2007.06.015. Epub 2007 Jun 12.

Abstract

Transport and distribution of systemic aluminium are influenced by its interaction with blood. Current understanding is centred upon the role played by the iron transport protein transferrin which has been shown to bind up to 90% of serum total aluminium. We have coined what we have called the blood-aluminium problem which states that the proportion of serum aluminium which, at any one moment in time, is bound by transferrin is more heavily influenced by kinetic constraints than thermodynamic equilibria with the result that the role played by transferrin in the transport and distribution of aluminium is likely to have been over estimated. To begin to solve the blood-aluminium problem and therewith provide a numerical solution to the aforementioned kinetic constraints we have applied and tested a simple computational model of the time-dependency of a putative transferrin ligand (L) binding aluminium to form an Al-L complex with a probability of existence, K(E), between 0% (no complex) and 100% (complex will not dissociate). The model is based upon the principles of a lattice-gas automaton which when ran for K(E) in the range 0.1-98.0% demonstrated the emergence of complex behaviour which could be defined in the terms of a set of parameters (equilibrium value, E(V), equilibrium time, E(T), peak value, P(V), peak time, P(T), area under curve, AUC) the values of which varied in a predictable way with K(E). When K(E) was set to 98% the model predicted that ca. 90% of the total aluminium would be bound by transferrin within ca. 350 simulation timesteps. We have used a systems biology approach to develop a simple model of the time-dependency of the binding of aluminium by transferrin. To use this approach to begin to solve the blood-aluminium problem we shall need to increase the complexity of the model to better reflect the heterogeneity of a biological system such as the blood.

摘要

全身铝的转运和分布受其与血液相互作用的影响。目前的认识集中在铁转运蛋白转铁蛋白所起的作用上,已表明它能结合高达90%的血清总铝。我们提出了所谓的血液 - 铝问题,即血清铝在任何时刻被转铁蛋白结合的比例,更多地受到动力学限制而非热力学平衡的影响,结果是转铁蛋白在铝的转运和分布中所起的作用可能被高估了。为了开始解决血液 - 铝问题,并由此为上述动力学限制提供数值解,我们应用并测试了一个简单的计算模型,该模型描述了假定的转铁蛋白配体(L)与铝结合形成Al - L复合物的时间依赖性,其存在概率K(E)在0%(无复合物)至100%(复合物不会解离)之间。该模型基于晶格气体自动机原理,当对K(E)在0.1 - 98.0%范围内运行时,展示出复杂行为的出现,这种行为可以用一组参数(平衡值,E(V),平衡时间,E(T),峰值,P(V),峰值时间,P(T),曲线下面积,AUC)来定义,这些参数的值随K(E)以可预测的方式变化。当K(E)设定为98%时,该模型预测在约350个模拟时间步内,约90%的总铝将被转铁蛋白结合。我们采用系统生物学方法开发了一个关于转铁蛋白结合铝的时间依赖性的简单模型。要利用这种方法开始解决血液 - 铝问题,我们需要增加模型的复杂性,以更好地反映诸如血液这样的生物系统的异质性。

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