Qiu Xu Sheng, Tang Nelson L S, Yeung Hiu Yan, Lee Kwong-Man, Hung Vivian W Y, Ng Bobby K W, Ma Suk Ling, Kwok Rachel H K, Qin Lin, Qiu Yong, Cheng Jack C Y
Department of Orthopaedics and Traumatology, Chinese University of Hong Kong, China.
Spine (Phila Pa 1976). 2007 Jul 15;32(16):1748-53. doi: 10.1097/BRS.0b013e3180b9f0ff.
A genetic association study to comprehensively investigate variations of melatonin receptor 1B gene polymorphism by a set of tagging single nucleotide polymorphisms (tagSNPs) derived from the International Hapmap project.
To determine whether melatonin receptor 1B (MTNR1B) gene polymorphisms are associated with the predisposition and/or disease severity of adolescent idiopathic scoliosis (AIS).
Linkage studies suggested a genetic predisposition for AIS. In addition, evidence showed that AIS might be related to melatonin deficiency and dysfunction of melatonin signaling pathway. Locating in one of the chromosomal regions linked to AIS, MTNR1B gene is a potential candidate gene for AIS.
This study was carried out in 2-stage case-control analysis: 1) initial screening (472 cases and 304 controls) and 2) separate replication test (342 cases and 347 controls) to confirm results in the screening. In the first screening stage, 5 tagSNPs were selected to cover most of the genetic variation in the MTNR1B gene. In the second stage, SNPs showing association in the screening stage were studied in a separate replication sample set to confirm the association. Genotyping was performed by PCR-RFLP.
The first stage showed a putative association between rs4753426 and AIS, which was confirmed in the replication sample set. By meta-analysis, the frequency of C allele of this SNP locating in the promoter was significantly higher in the cases than controls (P = 0.006 aftermeta-analysis). Subjects with the CC genotype had an odds ratio of 1.29 for AIS. Another SNP rs741837 in promoter region, being moderate linkage disequilibrium with rs4753426, was also marginally associated with AIS.
Polymorphisms of the promoter of MTNR1B gene were associated with AIS, but not with the curve severity in AIS patients. This suggested that MTNR1B was an AIS predisposition gene.
一项基因关联研究,通过一组来自国际人类基因组单体型图计划(International Hapmap project)的标签单核苷酸多态性(tagSNPs)全面研究褪黑素受体1B基因多态性的变异情况。
确定褪黑素受体1B(MTNR1B)基因多态性是否与青少年特发性脊柱侧凸(AIS)的易感性和/或疾病严重程度相关。
连锁研究提示AIS存在遗传易感性。此外,有证据表明AIS可能与褪黑素缺乏及褪黑素信号通路功能障碍有关。MTNR1B基因位于与AIS相关的染色体区域之一,是AIS的一个潜在候选基因。
本研究采用两阶段病例对照分析:1)初始筛查(472例病例和304例对照)和2)单独的重复验证试验(342例病例和347例对照)以确认筛查结果。在第一筛查阶段,选择5个tagSNPs以覆盖MTNR1B基因的大部分遗传变异。在第二阶段,对在筛查阶段显示出关联的SNPs在单独的重复样本组中进行研究以确认该关联。采用聚合酶链反应-限制性片段长度多态性(PCR-RFLP)进行基因分型。
第一阶段显示rs4753426与AIS之间存在假定关联,这在重复样本组中得到了证实。通过荟萃分析,该位于启动子区的SNP的C等位基因频率在病例组中显著高于对照组(荟萃分析后P = 0.006)。CC基因型的受试者患AIS的比值比为1.29。启动子区的另一个SNP rs741837与rs4753426存在中度连锁不平衡,也与AIS存在边缘关联。
MTNR1B基因启动子区多态性与AIS相关,但与AIS患者的侧弯严重程度无关。这表明MTNR1B是一个AIS易感基因。