Suppr超能文献

甲基营养型芽胞杆菌AM1中细胞间生长速率和基因表达的异质性。

Cell-to-cell heterogeneity in growth rate and gene expression in Methylobacterium extorquens AM1.

作者信息

Strovas Tim J, Sauter Linda M, Guo Xiaofeng, Lidstrom Mary E

机构信息

Department of Chemical Engineering, University of Washington, Box 352125, Seattle, WA 98195, USA.

出版信息

J Bacteriol. 2007 Oct;189(19):7127-33. doi: 10.1128/JB.00746-07. Epub 2007 Jul 20.

Abstract

Cell-to-cell heterogeneity in gene expression and growth parameters was assessed in the facultative methylotroph Methylobacterium extorquens AM1. A transcriptional fusion between a well-characterized methylotrophy promoter (P(mxaF)) and gfp(uv) (encoding a variant of green fluorescent protein [GFPuv]) was used to assess single-cell gene expression. Using a flowthrough culture system and laser scanning microscopy, data on fluorescence and cell size were obtained over time through several growth cycles for cells grown on succinate or methanol. Cells were grown continuously with no discernible lag between divisions, and high cell-to-cell variability was observed for cell size at division (2.5-fold range), division time, and growth rate. When individual cells were followed over multiple division cycles, no direct correlation was observed between the growth rate before a division and the subsequent growth rate or between the cell size at division and the subsequent growth rate. The cell-to-cell variability for GFPuv fluorescence from the P(mxaF) promoter was less, with a range on the order of 1.5-fold. Fluorescence and growth rate were also followed during a carbon shift experiment, in which cells growing on succinate were shifted to methanol. Variability of the response was observed, and the growth rate at the time of the shift from succinate to methanol was a predictor of the response. Higher growth rates at the time of the substrate shift resulted in greater decreases in growth rates immediately after the shift, but full induction of P(mxaF)-gfp(uv) was achieved faster. These results demonstrate that in M. extorquens, physiological heterogeneity at the single-cell level plays an important role in determining the population response to the metabolic shift examined.

摘要

在兼性甲基营养菌嗜甲基甲基杆菌AM1中评估了基因表达和生长参数的细胞间异质性。利用一个特征明确的甲基营养启动子(P(mxaF))与gfp(uv)(编码绿色荧光蛋白变体[GFPuv])之间的转录融合来评估单细胞基因表达。使用流通培养系统和激光扫描显微镜,在几个生长周期内,针对在琥珀酸盐或甲醇上生长的细胞,随着时间的推移获取了荧光和细胞大小的数据。细胞持续生长,分裂之间没有明显的停滞期,并且在分裂时的细胞大小(2.5倍范围)、分裂时间和生长速率方面观察到了较高的细胞间变异性。当跟踪单个细胞经过多个分裂周期时,在一次分裂前的生长速率与随后的生长速率之间,或者在分裂时的细胞大小与随后的生长速率之间,均未观察到直接相关性。来自P(mxaF)启动子的GFPuv荧光的细胞间变异性较小,范围约为1.5倍。在碳源转换实验中也跟踪了荧光和生长速率,在该实验中,在琥珀酸盐上生长的细胞被转换到甲醇上。观察到了反应的变异性,并且从琥珀酸盐转换到甲醇时的生长速率是反应的一个预测指标。底物转换时较高的生长速率导致转换后立即出现更大的生长速率下降,但P(mxaF)-gfp(uv)的完全诱导更快实现。这些结果表明,在嗜甲基甲基杆菌中,单细胞水平的生理异质性在决定群体对所研究的代谢转换的反应中起着重要作用。

相似文献

1
Cell-to-cell heterogeneity in growth rate and gene expression in Methylobacterium extorquens AM1.
J Bacteriol. 2007 Oct;189(19):7127-33. doi: 10.1128/JB.00746-07. Epub 2007 Jul 20.
2
Population heterogeneity in Methylobacterium extorquens AM1.
Microbiology (Reading). 2009 Jun;155(Pt 6):2040-2048. doi: 10.1099/mic.0.025890-0. Epub 2009 Apr 21.
5
Genetic and phenotypic comparison of facultative methylotrophy between Methylobacterium extorquens strains PA1 and AM1.
PLoS One. 2014 Sep 18;9(9):e107887. doi: 10.1371/journal.pone.0107887. eCollection 2014.
6
Production of heterologous protein by Methylobacterium extorquens in high cell density fermentation.
FEMS Microbiol Lett. 2004 Feb 16;231(2):197-204. doi: 10.1016/S0378-1097(03)00956-X.
7
Production of green fluorescent protein by the methylotrophic bacterium methylobacterium extorquens.
FEMS Microbiol Lett. 2000 Dec 15;193(2):195-200. doi: 10.1111/j.1574-6968.2000.tb09423.x.
8
XoxF is required for expression of methanol dehydrogenase in Methylobacterium extorquens AM1.
J Bacteriol. 2011 Nov;193(21):6032-8. doi: 10.1128/JB.05367-11. Epub 2011 Aug 26.

引用本文的文献

1
The reproduction of gram-negative protoplasts and the influence of environmental conditions on this process.
iScience. 2023 Oct 6;26(11):108149. doi: 10.1016/j.isci.2023.108149. eCollection 2023 Nov 17.
2
Sub-nanowatt microfluidic single-cell calorimetry.
Nat Commun. 2020 Jun 12;11(1):2982. doi: 10.1038/s41467-020-16697-5.
5
From Genes to Ecosystems in Microbiology: Modeling Approaches and the Importance of Individuality.
Front Microbiol. 2017 Nov 27;8:2299. doi: 10.3389/fmicb.2017.02299. eCollection 2017.
6
Heterogeneity between and within Strains of Exposed to Beer Compounds.
Front Microbiol. 2017 Feb 14;8:239. doi: 10.3389/fmicb.2017.00239. eCollection 2017.
7
Engineering yeast with bifunctional minicellulosome and cellodextrin pathway for co-utilization of cellulose-mixed sugars.
Biotechnol Biofuels. 2016 Jul 4;9:137. doi: 10.1186/s13068-016-0554-6. eCollection 2016.

本文引用的文献

1
Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise.
Nature. 2006 Jun 15;441(7095):840-6. doi: 10.1038/nature04785. Epub 2006 May 14.
2
The Growth Rate of Individual Bacterial Cells.
J Bacteriol. 1932 Feb;23(2):147-53. doi: 10.1128/jb.23.2.147-153.1932.
3
Real-time kinetics of gene activity in individual bacteria.
Cell. 2005 Dec 16;123(6):1025-36. doi: 10.1016/j.cell.2005.09.031.
5
Regulated cell-to-cell variation in a cell-fate decision system.
Nature. 2005 Sep 29;437(7059):699-706. doi: 10.1038/nature03998. Epub 2005 Sep 18.
6
Phenotypic diversity, population growth, and information in fluctuating environments.
Science. 2005 Sep 23;309(5743):2075-8. doi: 10.1126/science.1114383. Epub 2005 Aug 25.
7
Contributions of low molecule number and chromosomal positioning to stochastic gene expression.
Nat Genet. 2005 Sep;37(9):937-44. doi: 10.1038/ng1616. Epub 2005 Aug 7.
8
Diversify or die: generation of diversity in response to stress.
Crit Rev Microbiol. 2005;31(2):69-78. doi: 10.1080/10408410590921718.
9
Real-time RNA profiling within a single bacterium.
Proc Natl Acad Sci U S A. 2005 Jun 28;102(26):9160-4. doi: 10.1073/pnas.0503311102. Epub 2005 Jun 20.
10
Stochasticity in gene expression: from theories to phenotypes.
Nat Rev Genet. 2005 Jun;6(6):451-64. doi: 10.1038/nrg1615.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验