Suppr超能文献

用于 bulk 水中 La(3+) 分子动力学模拟的具有显式极化的对相互作用势

Pair interaction potentials with explicit polarization for molecular dynamics simulations of La(3+) in bulk water.

作者信息

Duvail Magali, Souaille Marc, Spezia Riccardo, Cartailler Thierry, Vitorge Pierre

机构信息

Laboratoire Analyse et Modélisation pour la Biologie et l'Environnement, CNRS UMR 8587, Université d'Evry Val d'Essonne, Boulevard F. Mitterrand, 91025 Evry Cedex, France.

出版信息

J Chem Phys. 2007 Jul 21;127(3):034503. doi: 10.1063/1.2751503.

Abstract

Pair interaction potentials (IPs) were defined to describe the La(3+)-OH(2) interaction for simulating the La(3+) hydration in aqueous solution. La(3+)-OH(2) IPs are taken from the literature or parametrized essentially to reproduce ab initio calculations at the second-order Moller-Plesset level of theory on La(H(2)O)(8) (3+). The IPs are compared and used with molecular dynamics (MD) including explicit polarization, periodic boundary conditions of La(H(2)O)(216) (3+) boxes, and TIP3P water model modified to include explicit polarization. As expected, explicit polarization is crucial for obtaining both correct La-O distances (r(La-O)) and La(3+) coordination number (CN). Including polarization also modifies hydration structure up to the second hydration shell and decreases the number of water exchanges between the La(3+) first and second hydration shells. r(La-O) ((1))=2.52 A and CN((1))=9.02 are obtained here for our best potential. These values are in good agreement with experimental data. The tested La-O IPs appear to essentially account for the La-O short distance repulsion. As a consequence, we propose that most of the multibody effects are correctly described by the explicit polarization contributions even in the first La(3+) hydration shell. The MD simulation results are slightly improved by adding a-typically negative 1r(6)-slightly attractive contribution to the-typically exponential-repulsive term of the La-O IP. Mean residence times are obtained from MD simulations for a water molecule in the first (1082 ps) and second (7.6 ps) hydration shells of La(3+). The corresponding water exchange is a concerted mechanism: a water molecule leaving La(H(2)O)(9) (3+) in the opposite direction to the incoming water molecule. La(H(2)O)(9) (3+) has a slightly distorded "6+3" tricapped trigonal prism D(3h) structure, and the weakest bonding is in the medium triangle, where water exchanges take place.

摘要

定义对相互作用势(IPs)来描述La(3+)与H₂O的相互作用,以模拟水溶液中La(3+)的水合作用。La(3+)-H₂O的IPs取自文献或进行参数化处理,主要是为了重现基于二阶Moller-Plesset理论水平对La(H₂O)₈(3+)进行的从头算计算。将这些IPs进行比较,并与分子动力学(MD)一起使用,MD包括显式极化、La(H₂O)₂₁₆(3+)盒子的周期性边界条件以及经过修改以包含显式极化的TIP3P水模型。正如预期的那样,显式极化对于获得正确的La-O距离(r(La-O))和La(3+)配位数(CN)至关重要。包含极化还会改变直至第二水合层的水合结构,并减少La(3+)第一和第二水合层之间的水交换次数。对于我们最佳的势,此处得到r(La-O)(₁)=2.52 Å和CN(₁)=9.02。这些值与实验数据吻合良好。所测试的La-O IPs似乎基本上考虑了La-O的短程排斥作用。因此,我们提出即使在La(3+)的第一水合层中,大多数多体效应也能通过显式极化贡献得到正确描述。通过在La-O IP的典型指数排斥项上添加一个通常为负的1/r⁶轻微吸引贡献,MD模拟结果略有改善。从MD模拟中获得了La(3+)第一水合层(1082 ps)和第二水合层(7.6 ps)中水分子的平均停留时间。相应的水交换是一种协同机制:一个水分子以与进入水分子相反的方向离开La(H₂O)₉(3+)。La(H₂O)₉(3+)具有略微扭曲的“6+3”三帽三棱柱D₃h结构,最弱的键合在发生水交换的中间三角形中。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验