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转座子展示技术支持果蝇盐渍组物种中P因子的转座活性。

Transposon display supports transpositional activity of P elements in species of the saltans group of Drosophila.

作者信息

de Setta Nathalia, Costa Ana Paula Pimentel, Lopes Fabrício Ramon, Van Sluys Marie-Anne, Carareto Cláudia Márcia Aparecida

机构信息

Universidade Estadual Paulista, Departamento de Biologia, São José do Rio Preto, SP, Brazil.

出版信息

J Genet. 2007 Apr;86(1):37-43. doi: 10.1007/s12041-007-0005-z.

Abstract

Mobilization of two P element subfamilies (canonical and O-type) from Drosophila sturtevanti and D. saltans was evaluated for copy number and transposition activity using the transposon display (TD) technique. Pairwise distances between strains regarding the insertion polymorphism profile were estimated. Amplification of the P element based on copy number estimates was highly variable among the strains (D. sturtevanti, canonical 20.11, O-type 9.00; D. saltans, canonical 16.4, O-type 12.60 insertions, on average). The larger values obtained by TD compared to our previous data by Southern blotting support the higher sensitivity of TD over Southern analysis for estimating transposable element copy numbers. The higher numbers of the canonical P element and the greater divergence in its distribution within the genome of D. sturtevanti (24.8%) compared to the O-type (16.7%), as well as the greater divergence in the distribution of the canonical P element, between the D. sturtevanti (24.8%) and the D. saltans (18.3%) strains, suggest that the canonical element occupies more sites within the D. sturtevanti genome, most probably due to recent transposition activity. These data corroborate the hypothesis that the O-type is the oldest subfamily of P elements in the saltans group and suggest that the canonical P element is or has been transpositionally active until more recently in D. sturtevanti.

摘要

利用转座子展示(TD)技术,评估了来自斯图尔特果蝇(Drosophila sturtevanti)和盐沼果蝇(D. saltans)的两个P因子亚家族(标准型和O型)的拷贝数和转座活性。估算了各菌株在插入多态性图谱方面的成对距离。基于拷贝数估算的P因子扩增在各菌株间差异很大(斯图尔特果蝇,标准型平均为20.11个插入,O型为9.00个插入;盐沼果蝇,标准型平均为16.4个插入,O型为12.60个插入)。与我们之前通过Southern印迹法获得的数据相比,TD获得的更大数值支持了TD在估算转座元件拷贝数方面比Southern分析具有更高的灵敏度。标准型P因子数量更多,且其在斯图尔特果蝇基因组内的分布差异(24.8%)比O型(16.7%)更大,以及标准型P因子在斯图尔特果蝇(24.8%)和盐沼果蝇(18.3%)菌株间的分布差异更大,这表明标准型元件在斯图尔特果蝇基因组中占据了更多位点,很可能是由于近期的转座活性。这些数据证实了O型是盐沼果蝇组中最古老的P因子亚家族这一假说,并表明标准型P因子直到最近在斯图尔特果蝇中仍具有或一直具有转座活性。

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