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利用连锁区间内的拷贝数分析快速鉴定致病突变

Rapid identification of disease-causing mutations using copy number analysis within linkage intervals.

作者信息

Bayrakli Fatih, Bilguvar Kaya, Mason Christopher E, DiLuna Michael L, Bayri Yasar, Gungor Levent, Terzi Murat, Mane Shrikant M, Lifton Richard P, State Matthew W, Gunel Murat

机构信息

Department of Neurosurgery, Yale University School of Medicine, New Haven, Connecticut 06510, USA.

出版信息

Hum Mutat. 2007 Dec;28(12):1236-40. doi: 10.1002/humu.20592.

DOI:10.1002/humu.20592
PMID:17676595
Abstract

SNP and comparative genome hybridization arrays (aCGH) are powerful techniques for identifying genome rearrangements, deletions, and duplications. We hypothesized that current array-based detection of copy number variation (CNV) could complement parametric linkage analysis and allow the rapid identification of functional mutations in families with inherited disorders. Herein, we demonstrate the utility of this technique by rapidly identifying a disease causing microdeletion within the PARK2 gene in a family with autosomal recessive Parkinsonism.

摘要

单核苷酸多态性(SNP)和比较基因组杂交阵列(aCGH)是用于识别基因组重排、缺失和重复的强大技术。我们推测,当前基于阵列的拷贝数变异(CNV)检测可以补充参数连锁分析,并能在患有遗传性疾病的家族中快速识别功能突变。在此,我们通过在一个患有常染色体隐性帕金森症的家族中快速识别出PARK2基因内一个致病的微缺失,证明了该技术的实用性。

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1
Rapid identification of disease-causing mutations using copy number analysis within linkage intervals.利用连锁区间内的拷贝数分析快速鉴定致病突变
Hum Mutat. 2007 Dec;28(12):1236-40. doi: 10.1002/humu.20592.
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引用本文的文献

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Neural tube defect family with recessive trait linked to chromosome 9q21.12-21.31.具有隐性性状的神经管缺陷家族与9号染色体q21.12 - 21.31区域相关联。
Childs Nerv Syst. 2015 Aug;31(8):1367-70. doi: 10.1007/s00381-015-2753-z. Epub 2015 May 26.
2
Genomic instability in the PARK2 locus is associated with Parkinson's disease.PARK2基因座的基因组不稳定性与帕金森病相关。
J Appl Genet. 2015 Nov;56(4):451-461. doi: 10.1007/s13353-015-0282-9. Epub 2015 Apr 2.
3
Mutations in PRKN and SNCA Genes Important for the Progress of Parkinson's Disease.
PRKN 和 SNCA 基因突变与帕金森病的进展有关。
Curr Genomics. 2013 Dec;14(8):502-17. doi: 10.2174/1389202914666131210205839.
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Breakpoint mapping of 13 large parkin deletions/duplications reveals an exon 4 deletion and an exon 7 duplication as founder mutations.13 个大 parkin 缺失/重复的断点作图揭示了一个exon4 缺失和一个exon7 重复作为主要突变。
Neurogenetics. 2011 Nov;12(4):263-71. doi: 10.1007/s10048-011-0302-9. Epub 2011 Oct 13.
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Genetic etiology of Parkinson disease associated with mutations in the SNCA, PARK2, PINK1, PARK7, and LRRK2 genes: a mutation update.SNCA、PARK2、PINK1、PARK7 和 LRRK2 基因突变与帕金森病的遗传病因学:突变更新。
Hum Mutat. 2010 Jul;31(7):763-80. doi: 10.1002/humu.21277.
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Novel VLDLR microdeletion identified in two Turkish siblings with pachygyria and pontocerebellar atrophy.在两名患有巨脑回和桥脑小脑萎缩的土耳其兄弟中发现了新型 VLDLR 微缺失。
Neurogenetics. 2010 Jul;11(3):319-25. doi: 10.1007/s10048-009-0232-y. Epub 2010 Jan 15.