Mohanty Sandipan, Hansmann U H E
John von Neumann Institut für Computing, Forschungszentrum Jülich, Jülich, Germany.
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Jul;76(1 Pt 1):012901. doi: 10.1103/PhysRevE.76.012901. Epub 2007 Jul 18.
Experimentally well-characterized proteins that are small enough to be computationally tractable provide useful information for refining existing all-atom force fields. This is used by us for reparametrizing a recently developed all-atom force field. Relying on high statistics parallel tempering simulations of a designed 20 residue beta-sheet peptide, we propose incremental changes that improve the force field's range of applicability.
实验表征充分且体积小到足以进行计算处理的蛋白质,能为优化现有的全原子力场提供有用信息。我们利用这一点对最近开发的全原子力场进行重新参数化。依靠对一种设计的20残基β-折叠肽进行的高统计并行回火模拟,我们提出了渐进式改变,以扩大力场的适用范围。