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酵母转录分析确定了不同的Rel和背侧DNA识别序列。

A yeast transcription assay defines distinct rel and dorsal DNA recognition sequences.

作者信息

Kamens J, Brent R

机构信息

Department of Molecular Biology, Massachusetts General Hospital, Boston 02114.

出版信息

New Biol. 1991 Oct;3(10):1005-13.

PMID:1768648
Abstract

Recent data have demonstrated that vRel, cRel, Dorsal, and NF-kappa B are members of a larger family of DNA-binding regulatory proteins. Rel proteins interact to form homo- and heterodimers that recognize specific sites on DNA, and it is likely that such protein-protein and protein-DNA interactions contribute to proper regulation of target gene expression by these proteins. Here we describe the use of a yeast transcription activation assay to study binding of three Rel family proteins to their native binding sites. These results show that the vRel and cRel proteins recognize two known NF-kappa B binding sites; the Dorsal protein does not recognize NF-kappa B sites, but does recognize related sites upstream of the Drosophila zerknüllt gene. Our experiments demonstrate that the members of this protein family recognize similar, but not identical, sites in the promoters of target genes, and we are able to identify a particular nucleotide that is apparently involved in the DNA-protein interaction. We exploit the properties of LexA fusion proteins to study the dimerization and DNA-contacting domains of cRel. Our results suggest that the cRel protein forms homodimers and that dimer formation may be necessary for cRel to bind DNA. Finally, our results show that transcription activation by these proteins is cooperative; such cooperativity may be important for correct temporal and spatial regulation of target gene expression.

摘要

最近的数据表明,vRel、cRel、Dorsal和核因子-κB是一个更大的DNA结合调节蛋白家族的成员。Rel蛋白相互作用形成同源二聚体和异源二聚体,识别DNA上的特定位点,并且这种蛋白质-蛋白质和蛋白质-DNA相互作用可能有助于这些蛋白质对靶基因表达的正确调节。在这里,我们描述了使用酵母转录激活试验来研究三种Rel家族蛋白与其天然结合位点的结合。这些结果表明,vRel和cRel蛋白识别两个已知的核因子-κB结合位点;Dorsal蛋白不识别核因子-κB位点,但能识别果蝇zerknüllt基因上游的相关位点。我们的实验表明,这个蛋白家族的成员在靶基因启动子中识别相似但不相同的位点,并且我们能够鉴定出一个明显参与DNA-蛋白质相互作用的特定核苷酸。我们利用LexA融合蛋白的特性来研究cRel的二聚化和DNA接触结构域。我们的结果表明,cRel蛋白形成同源二聚体,并且二聚体形成可能是cRel结合DNA所必需的。最后,我们的结果表明,这些蛋白的转录激活是协同的;这种协同作用可能对靶基因表达的正确时空调节很重要。

相似文献

1
A yeast transcription assay defines distinct rel and dorsal DNA recognition sequences.酵母转录分析确定了不同的Rel和背侧DNA识别序列。
New Biol. 1991 Oct;3(10):1005-13.
2
v-Rel and c-Rel are differentially affected by mutations at a consensus protein kinase recognition sequence.v-Rel和c-Rel受共有蛋白激酶识别序列处突变的影响不同。
Oncogene. 1993 Mar;8(3):721-30.
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The v-Rel oncoprotein increases expression from Sp1 site-containing promoters in chicken embryo fibroblasts.v-Rel癌蛋白可增加鸡胚成纤维细胞中含Sp1位点启动子的表达。
Oncogene. 1993 Sep;8(9):2501-9.
4
Repression of the chicken c-rel promoter by vRel in chicken embryo fibroblasts is not mediated through a consensus NF-kappa B binding site.在鸡胚成纤维细胞中,vRel对鸡c-rel启动子的抑制作用并非通过共有核因子κB结合位点介导。
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vRel is an inactive member of the Rel family of transcriptional activating proteins.vRel是转录激活蛋白Rel家族的一个无活性成员。
J Virol. 1991 Jun;65(6):3122-30. doi: 10.1128/JVI.65.6.3122-3130.1991.
6
Mutant envelope residues confer a transactivation function onto N-terminal sequences of the v-Rel oncoprotein.突变的包膜残基赋予v-Rel癌蛋白N端序列反式激活功能。
Oncogene. 2000 Feb 3;19(5):599-607. doi: 10.1038/sj.onc.1203376.
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v-rel- and c-rel-protein complexes bind to the NF-kappa B site in vitro.v-rel和c-rel蛋白复合物在体外与核因子κB位点结合。
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Genetic analysis of growth inhibition by GAL4-L kappa B-alpha in Saccharomyces cerevisiae.酿酒酵母中GAL4-LκB-α对生长抑制的遗传分析。
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Association between proto-oncoprotein Rel and TATA-binding protein mediates transcriptional activation by NF-kappa B.原癌蛋白Rel与TATA结合蛋白之间的关联介导了核因子κB的转录激活作用。
Nature. 1993 Sep 30;365(6445):412-9. doi: 10.1038/365412a0.
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Jun DNA-binding is modulated by mutations between the leucines or by direct interaction of fos with the TGACTCA sequence.Jun的DNA结合通过亮氨酸之间的突变或fos与TGACTCA序列的直接相互作用来调节。
New Biol. 1989 Nov;1(2):181-91.

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PLoS One. 2015 Jul 6;10(7):e0130170. doi: 10.1371/journal.pone.0130170. eCollection 2015.
2
A Ham1p-dependent mechanism and modulation of the pyrimidine biosynthetic pathway can both confer resistance to 5-fluorouracil in yeast.在酵母中,依赖于 Ham1p 的机制和嘧啶生物合成途径的调节都可以赋予其对 5-氟尿嘧啶的抗性。
PLoS One. 2013 Oct 4;8(10):e52094. doi: 10.1371/journal.pone.0052094. eCollection 2013.
3
The jmjN and jmjC domains of the yeast zinc finger protein Gis1 interact with 19 proteins involved in transcription, sumoylation and DNA repair.
酵母锌指蛋白Gis1的jmjN和jmjC结构域与19种参与转录、类泛素化修饰和DNA修复的蛋白质相互作用。
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LIM domain-containing protein trip6 can act as a coactivator for the v-Rel transcription factor.含LIM结构域的蛋白Trip6可作为v-Rel转录因子的共激活因子。
Gene Expr. 1999;8(4):207-17.
5
Association of distinct yeast Not2 functional domains with components of Gcn5 histone acetylase and Ccr4 transcriptional regulatory complexes.不同的酵母Not2功能结构域与Gcn5组蛋白乙酰转移酶和Ccr4转录调控复合物成分的关联。
EMBO J. 1998 Nov 16;17(22):6714-22. doi: 10.1093/emboj/17.22.6714.
6
Human cytomegalovirus capsid assembly protein precursor (pUL80.5) interacts with itself and with the major capsid protein (pUL86) through two different domains.人巨细胞病毒衣壳组装蛋白前体(pUL80.5)通过两个不同结构域与自身以及主要衣壳蛋白(pUL86)相互作用。
J Virol. 1997 Jan;71(1):179-90. doi: 10.1128/JVI.71.1.179-190.1997.
7
Interaction of the v-Rel oncoprotein with NF-kappaB and IkappaB proteins: heterodimers of a transformation-defective v-Rel mutant and NF-2 are functional in vitro and in vivo.v-Rel癌蛋白与NF-κB和IκB蛋白的相互作用:转化缺陷型v-Rel突变体与NF-2的异二聚体在体外和体内均具有功能。
Mol Cell Biol. 1996 Mar;16(3):1169-78. doi: 10.1128/MCB.16.3.1169.
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Conservation of transcriptional activation functions of the NF-kappa B p50 and p65 subunits in mammalian cells and Saccharomyces cerevisiae.哺乳动物细胞和酿酒酵母中NF-κB p50和p65亚基转录激活功能的保守性
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Functional analysis of mouse Hoxa-7 in Saccharomyces cerevisiae: sequences outside the homeodomain base contact zone influence binding and activation.小鼠Hoxa - 7在酿酒酵母中的功能分析:同源异型结构域碱基接触区外的序列影响结合与激活。
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Transcriptional activation by CTF proteins is mediated by a bipartite low-proline domain.CTF蛋白介导的转录激活由一个双组分低脯氨酸结构域介导。
Proc Natl Acad Sci U S A. 1994 Apr 26;91(9):3901-5. doi: 10.1073/pnas.91.9.3901.