Cobucci-Ponzano Beatrice, Conte Fiorella, Rossi Mosè, Moracci Marco
Institute of Protein Biochemistry, Consiglio Nazionale delle Ricerche, Via P. Castellino 111, 80131 Naples, Italy.
Extremophiles. 2008 Jan;12(1):61-8. doi: 10.1007/s00792-007-0105-y. Epub 2007 Aug 9.
Glycoside hydrolases form hyperthermophilic archaea are interesting model systems for the study of catalysis at high temperatures and, at the moment, their detailed enzymological characterization is the only approach to define their role in vivo. Family 29 of glycoside hydrolases classification groups alpha-L-fucosidases involved in a variety of biological events in Bacteria and Eukarya. In Archaea the first alpha-L-fucosidase was identified in Sulfolobus solfataricus as interrupted gene expressed by programmed -1 frameshifting. In this review, we describe the identification of the catalytic residues of the archaeal enzyme, by means of the chemical rescue strategy. The intrinsic stability of the hyperthermophilic enzyme allowed the use of this method, which resulted of general applicability for beta and alpha glycoside hydrolases. In addition, the presence in the active site of the archaeal enzyme of a triad of catalytic residues is a rather uncommon feature among the glycoside hydrolases and suggested that in family 29 slightly different catalytic machineries coexist.
来自嗜热古菌的糖苷水解酶是研究高温催化的有趣模型系统,目前,对它们进行详细的酶学表征是确定其在体内作用的唯一方法。糖苷水解酶分类中的第29家族包含参与细菌和真核生物各种生物事件的α-L-岩藻糖苷酶。在古菌中,首个α-L-岩藻糖苷酶是在嗜热栖热菌中作为通过程序性-1移码表达的中断基因被鉴定出来的。在本综述中,我们描述了借助化学拯救策略对古菌酶催化残基的鉴定。嗜热酶的固有稳定性使得该方法得以应用,结果表明该方法对β和α糖苷水解酶具有普遍适用性。此外,古菌酶活性位点中存在催化残基三联体,这在糖苷水解酶中是相当罕见的特征,表明在第29家族中存在略有不同的催化机制。