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二聚体正交晶体中一种不寻常的假半面孪晶情况。

An unusual case of pseudo-merohedral twinning in orthorhombic crystals of Dicer.

作者信息

MacRae Ian J, Doudna Jennifer A

机构信息

Howard Hughes Medical Institute, Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.

出版信息

Acta Crystallogr D Biol Crystallogr. 2007 Sep;63(Pt 9):993-9. doi: 10.1107/S0907444907036128. Epub 2007 Aug 17.

Abstract

The crystal structure of the enzyme Dicer from Giardia intestinalis was solved to 3.3 A resolution by MAD using crystals belonging to space group P2(1)2(1)2 [Macrae et al. (2006), Science, 311, 195-198]. These crystals were derived from crystals that diffracted X-rays to 3.0 A resolution but were refractory to structure determination because they were twinned. It is shown here that the original Dicer crystals represent an unusual case of perfect pseudo-merohedral twinning of orthorhombic crystals. Before the twinning problem was overcome, it was possible to calculate a low-resolution electron-density map in space group P4(1) that was used to build a partial molecular model. Experimental phases were sufficient to identify heavy-atom sites that indicated space-group inconsistency, leading to identification of the true space group. This information guided the search for different crystallization conditions that yielded untwinned crystals and ultimately a fully interpretable electron-density map.

摘要

利用属于空间群P2(1)2(1)2的晶体,通过多波长反常散射(MAD)法将来自贾第虫属肠道贾第虫的Dicer酶的晶体结构解析到3.3 Å分辨率[Macrae等人(2006年),《科学》,311,195 - 198]。这些晶体源自能将X射线衍射到3.0 Å分辨率的晶体,但由于存在孪晶而难以进行结构测定。本文表明,最初的Dicer晶体代表了正交晶系晶体完美假单形孪晶的一个不寻常案例。在孪晶问题解决之前,有可能在空间群P4(1)中计算出一个低分辨率电子密度图,该图被用于构建一个部分分子模型。实验相位足以识别表明空间群不一致的重原子位点,从而确定真实的空间群。这些信息指导了对不同结晶条件的探索,最终得到了无孪晶的晶体以及一个完全可解释的电子密度图。

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