Ciche Todd A, Sternberg Paul W
Department of Microbiology and Molecular Genetics, Michigan State University, 2215 Biomedical Physical Sciences Building, East Lansing, MI 48824, USA.
BMC Dev Biol. 2007 Sep 5;7:101. doi: 10.1186/1471-213X-7-101.
Heterorhabditis bacteriophora is applied throughout the world for the biological control of insects and is an animal model to study interspecies interactions, e.g. mutualism, parasitism and vector-borne disease. H. bacteriophora nematodes are mutually associated with the insect pathogen, Photorhabdus luminescens. The developmentally arrested infective juvenile (IJ) stage nematode (vector) specifically transmits Photorhabdus luminescens bacteria (pathogen) in its gut mucosa to the haemocoel of insects (host). The nematode vector and pathogen alone are not known to cause insect disease. RNA interference is an excellent reverse genetic tool to study gene function in C. elegans, and it would be useful in H. bacteriophora to exploit the H. bacteriophora genome project, currently in progress.
Soaking L1 stage H. bacteriophora with seven dsRNAs of genes whose C. elegans orthologs had severe RNAi phenotypes resulted in highly penetrant and obvious developmental and reproductive abnormalities. The efficacy of postembryonic double strand RNA interference (RNAi) was evident by abnormal gonad morphology and sterility of adult H. bacteriophora and C. elegans presumable due to defects in germ cell proliferation and gonad development. The penetrance of RNAi phenotypes in H. bacteriophora was high for five genes (87-100%; Hba-cct-2, Hba-daf-21, Hba-icd-1; Hba-nol-5, and Hba-W01G7.3) and moderate for two genes (usually 30-50%; Hba-rack-1 and Hba-arf-1). RNAi of three additional C. elegans orthologs for which RNAi phenotypes were not previously detected in C. elegans, also did not result in any apparent phenotypes in H. bacteriophora. Specific and severe reduction in transcript levels in RNAi treated L1s was determined by quantitative real-time RT-PCR. These results suggest that postembryonic RNAi by soaking is potent and specific.
Although RNAi is conserved in animals and plants, RNAi using long dsRNA is not. These results demonstrate that RNAi can be used effectively in H. bacteriophora and can be applied for analyses of nematode genes involved in symbiosis and parasitism. It is likely that RNAi will be an important tool for functional genomics utilizing the high quality draft H. bacteriophora genome sequence.
嗜菌异小杆线虫在全球范围内被用于昆虫的生物防治,并且是研究种间相互作用(如互利共生、寄生和媒介传播疾病)的动物模型。嗜菌异小杆线虫与昆虫病原体发光杆菌相互关联。发育停滞的感染性幼虫(IJ)阶段线虫(载体)在其肠道黏膜中将发光杆菌(病原体)特异性地传播至昆虫(宿主)的血腔。仅线虫载体和病原体本身不会导致昆虫发病。RNA干扰是研究秀丽隐杆线虫基因功能的一种出色的反向遗传学工具,利用目前正在进行的嗜菌异小杆线虫基因组计划,它在线虫中将会很有用。
用七个基因的双链RNA浸泡嗜菌异小杆线虫的L1阶段,这些基因在秀丽隐杆线虫中的直系同源基因具有严重的RNA干扰表型,结果导致高度外显且明显的发育和生殖异常。成虫嗜菌异小杆线虫和秀丽隐杆线虫的性腺形态异常和不育表明胚胎后双链RNA干扰(RNAi)的效果显著,这可能是由于生殖细胞增殖和性腺发育存在缺陷。对于五个基因(87 - 100%;Hba - cct - 2、Hba - daf - 21、Hba - icd - 1;Hba - nol - 5和Hba - W01G7.3),RNAi表型在嗜菌异小杆线虫中的外显率很高,对于两个基因(通常为30 - 50%;Hba - rack - 1和Hba - arf - 1)则为中等。另外三个在秀丽隐杆线虫中先前未检测到RNAi表型的秀丽隐杆线虫直系同源基因的RNAi,在嗜菌异小杆线虫中也未导致任何明显的表型。通过定量实时RT - PCR确定RNAi处理的L1中特定基因转录水平的特异性和显著降低。这些结果表明通过浸泡进行的胚胎后RNAi是有效的且具有特异性。
虽然RNA干扰在动植物中是保守的,但使用长双链RNA的RNA干扰并非如此。这些结果表明RNAi可有效地用于嗜菌异小杆线虫,并可应用于分析参与共生和寄生的线虫基因。利用高质量的嗜菌异小杆线虫基因组草图序列,RNA干扰很可能将成为功能基因组学的重要工具。