Hemmer-Hansen J, Nielsen E E, Frydenberg J, Loeschcke V
Department of Ecology and Genetics, University of Aarhus, Aarhus C, Denmark.
Heredity (Edinb). 2007 Dec;99(6):592-600. doi: 10.1038/sj.hdy.6801055. Epub 2007 Sep 12.
Little is known about local adaptations in marine fishes since population genetic surveys in these species have typically not applied genetic markers subject to selection. In this study, we used a candidate gene approach to investigate adaptive population divergence in the European flounder (Platichthys flesus L.) throughout the northeastern Atlantic. We contrasted patterns of genetic variation in a presumably neutral microsatellite baseline to patterns from a heat-shock cognate protein gene, Hsc70. Using two different neutrality tests we found that the microsatellite data set most likely represented a neutral baseline. In contrast, Hsc70 strongly deviated from neutral expectations. Importantly, when estimating standardized levels of population divergence (F(ST)'), we also found a large discrepancy in the patterns of structuring in the two data sets. Thus, samples grouped according to geographical or historical proximity with regards to microsatellites, but according to environmental similarities with regards to Hsc70. The differences between the data sets were particularly pronounced in pairwise comparisons involving populations in the western and central Baltic Sea. For instance, the genetic differentiation between geographically close Baltic Sea and North Sea populations was found to be 0.02 and 0.45 for microsatellites and Hsc70 respectively. Our results strongly suggest adaptive population divergence and indicate local adaptations at the DNA level in a background of high levels of gene flow, typically found in many marine fish species. Furthermore, this study highlights the usefulness of the candidate gene approach for demonstrating local selection in non-model organisms such as most marine fishes.
由于对海洋鱼类的群体遗传学调查通常未应用受选择的遗传标记,因此人们对海洋鱼类的局部适应性了解甚少。在本研究中,我们采用候选基因方法来研究整个东北大西洋的欧洲比目鱼(Platichthys flesus L.)的适应性群体分化。我们将一个可能为中性的微卫星基线的遗传变异模式与热休克同源蛋白基因Hsc70的模式进行了对比。使用两种不同的中性检验,我们发现微卫星数据集很可能代表了一个中性基线。相比之下,Hsc70强烈偏离了中性预期。重要的是,在估计群体分化的标准化水平(F(ST)')时,我们还发现两个数据集的结构模式存在很大差异。因此,就微卫星而言,样本根据地理或历史上的接近程度进行分组,但就Hsc70而言,则根据环境相似性进行分组。在涉及波罗的海西部和中部种群的成对比较中,数据集之间的差异尤为明显。例如,在地理上相近的波罗的海和北海种群之间,微卫星和Hsc70的遗传分化分别为0.02和0.45。我们的结果有力地表明了适应性群体分化,并表明在许多海洋鱼类中常见的高基因流背景下,DNA水平上存在局部适应性。此外,这项研究突出了候选基因方法在证明大多数海洋鱼类等非模式生物中的局部选择方面的有用性。