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5-溴-2',3'-二脱氧尿苷的结构与构象

Structure and conformation of 5-bromo-2',3'-dideoxyuridine.

作者信息

Kim H, Parthasarathy R

机构信息

Department of Biophysics, Roswell Park Memorial Institute, Buffalo, NY 14263.

出版信息

Acta Crystallogr C. 1991 Sep 15;47 ( Pt 9):1892-5. doi: 10.1107/s0108270191000859.

DOI:10.1107/s0108270191000859
PMID:1786166
Abstract

C9H11BrN2O4, Mr = 291.11, monoclinic, P2(1), a = 11.307 (1), b = 5.954 (1), c = 15.829 (2) A, beta = 93.25 (1) degree, V = 1063.90 A3, Z = 4, Dx = 1.82 g cm-3, lambda(Cu K alpha) = 1.54184 A, mu = 53.58 cm-1, F(000) = 584, T = 295 K, R = 0.034 for 1927 observed reflections [I greater than 3 sigma(I)]. The crystal structure contains two independent molecules forming a dimer linked by a pair of N3--H...O2 hydrogen bonds; the crystal structure is stabilized by four additional hydrogen bonds. Two of these are internal C6--H6...O5' hydrogen bonds, one in molecule A and another in molecule B. These two molecules exhibit two different conformations; their sugar ring puckers are 2'-endo-3'-exo for molecule A and 3'-endo-2'-exo for molecule B. The Cl'--N1 distance, the chi CN torsion angle and the glycosidic conformation are 1.464 (8) A, -130.0 degrees and -anticlinal for molecule A and 1.506 (8) A, -168.9 degrees and -antiperiplanar for molecule B, respectively.

摘要

C9H11BrN2O4,Mr = 291.11,单斜晶系,P2(1),a = 11.307(1),b = 5.954(1),c = 15.829(2) Å,β = 93.25(1)°,V = 1063.90 Å3,Z = 4,Dx = 1.82 g cm-3,λ(Cu Kα) = 1.54184 Å,μ = 53.58 cm-1,F(000) = 584,T = 295 K,对于1927个观测反射[I大于3σ(I)],R = 0.034。晶体结构包含两个独立分子,通过一对N3--H...O2氢键形成二聚体;晶体结构通过另外四个氢键得以稳定。其中两个是分子内C6--H6...O5'氢键,一个在分子A中,另一个在分子B中。这两个分子呈现出两种不同的构象;它们的糖环褶皱对于分子A是2'-内-3'-外,对于分子B是3'-内-2'-外。分子A的Cl'--N1距离、χ CN扭转角和糖苷构象分别为1.464(8) Å、-130.0°和反斜式,分子B的分别为1.506(8) Å、-168.9°和反叠式。

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