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基于片段分子轨道方法的含时密度泛函理论。

Time-dependent density functional theory based upon the fragment molecular orbital method.

作者信息

Chiba Mahito, Fedorov Dmitri G, Kitaura Kazuo

机构信息

Research Institute for Computational Sciences, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Umezono, Tsukuba, Ibaraki 305-8568, Japan.

出版信息

J Chem Phys. 2007 Sep 14;127(10):104108. doi: 10.1063/1.2772850.

Abstract

Time-dependent density functional theory (TDDFT) was combined with the two-body fragment molecular orbital method (FMO2). In this FMO2-TDDFT scheme, the system is divided into fragments, and the electron density for fragments is determined self-consistently. Consequently, only one main fragment of interest and several fragment pairs including it are calculated by TDDFT. To demonstrate the accuracy of FMO2-TDDFT, we computed several low-lying singlet and triplet excited states of solvated phenol and polyalanine using our method and the standard TDDFT for the full system. The BLYP functional with the long-range correction (LC-BLYP) was employed with the 6-31G() basis set (some tests were also performed with 6-311G(), as well as with B3LYP and time-dependent Hartree-Fock). Typically, FMO2-TDDFT reproduced the full TDDFT excitation energies within 0.1 eV, and for one excited state the error was about 0.2 eV. Beside the accurate reproduction of the TDDFT excitation energies, we also automatically get an excitation energy decomposition analysis, which provides the contributions of individual fragments. Finally, the efficiency of our approach was exemplified on the LC-BLYP6-31G(*) calculation of the lowest singlet excitation of the photoactive yellow protein which consists of 1931 atoms, and the obtained value of 3.1 eV is in agreement with the experimental value of 2.8 eV.

摘要

含时密度泛函理论(TDDFT)与二体片段分子轨道方法(FMO2)相结合。在这种FMO2 - TDDFT方案中,系统被划分为多个片段,片段的电子密度通过自洽确定。因此,TDDFT仅计算一个感兴趣的主要片段以及包含该片段的几个片段对。为了证明FMO2 - TDDFT的准确性,我们使用我们的方法以及针对整个系统的标准TDDFT计算了溶剂化苯酚和聚丙氨酸的几个低激发单重态和三重态。采用具有长程校正的BLYP泛函(LC - BLYP)和6 - 31G()基组(也使用6 - 311G()以及B3LYP和含时Hartree - Fock进行了一些测试)。通常,FMO2 - TDDFT能在0.1 eV范围内重现完整TDDFT的激发能,对于一个激发态,误差约为0.2 eV。除了准确重现TDDFT激发能外,我们还自动获得了激发能分解分析,该分析给出了各个片段的贡献。最后,我们以光活性黄色蛋白最低单重激发态的LC - BLYP/6 - 31G(*)计算为例展示了我们方法的效率,该蛋白由1931个原子组成,得到的3.1 eV值与2.8 eV的实验值相符。

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