Hohmann Stefan, Krantz Marcus, Nordlander Bodil
Department of Cell and Molecular Biology, Göteborg University, Göteborg, Sweden.
Methods Enzymol. 2007;428:29-45. doi: 10.1016/S0076-6879(07)28002-4.
Osmoregulation is the active control of the cellular water balance and encompasses homeostatic mechanisms crucial for life. The osmoregulatory system in the yeast Saccharomyces cerevisiae is particularly well understood. Key to yeast osmoregulation is the production and accumulation of the compatible solute glycerol, which is partly controlled by the high osmolarity glycerol (HOG) signaling system. Genetic analyses combined with studies on protein-protein interactions have revealed the wiring scheme of the HOG signaling network, a branched mitogen-activated protein (MAP) kinase (MAPK) pathway that eventually converges on the MAPK Hog1. Hog1 is activated following cell shrinking and controls posttranscriptional processes in the cytosol as well as gene expression in the nucleus. HOG pathway activity can easily and rapidly be controlled experimentally by extracellular stimuli, and signaling and adaptation can be separated by a system of forced adaptation. This makes yeast osmoregulation suitable for studies on system properties of signaling and cellular adaptation via mathematical modeling. Computational simulations and parallel quantitative time course experimentation on different levels of the regulatory system have provided a stepping stone toward a holistic understanding, revealing how the HOG pathway can combine rigorous feedback control with maintenance of signaling competence. The abundant tools make yeast a suitable model for an integrated analysis of cellular osmoregulation. Maintenance of the cellular water balance is fundamental for life. All cells, even those in multicellular organisms with an organism-wide osmoregulation, have the ability to actively control their water balance. Osmoregulation encompasses homeostatic processes that maintain an appropriate intracellular environment for biochemical processes as well as turgor of cells and organism. In the laboratory, the osmoregulatory system is studied most conveniently as a response to osmotic shock, causing rapid and dramatic changes in the extracellular water activity. Those rapid changes mediate either water efflux (hyperosmotic shock), and hence cell shrinkage, or influx (hypoosmotic shock), causing cell swelling. The yeast S. cerevisiae, as a free-living organism experiencing both slow and rapid changes in extracellular water activity, has proven a suitable and genetically tractable experimental system in studying the underlying signaling pathways and regulatory processes governing osmoregulation. Although far from complete, the present picture of yeast osmoregulation is both extensive and detailed (de Nadal et al., 2002; Hohmann, 2002; Klipp et al., 2005). Simulations using mathematical models combined with time course measurements of different molecular processes in signaling and adaptation have allowed elucidation of the first system properties on the yeast osmoregulatory network.
渗透调节是对细胞水平衡的主动控制,包括对生命至关重要的稳态机制。酿酒酵母中的渗透调节系统已得到了很好的理解。酵母渗透调节的关键在于相容性溶质甘油的产生和积累,这部分受高渗甘油(HOG)信号系统控制。基因分析与蛋白质 - 蛋白质相互作用研究相结合,揭示了HOG信号网络的连接模式,这是一种分支的丝裂原活化蛋白(MAP)激酶(MAPK)途径,最终汇聚于MAPK Hog1。Hog1在细胞收缩后被激活,并控制细胞质中的转录后过程以及细胞核中的基因表达。HOG途径的活性可以通过细胞外刺激轻松快速地进行实验控制,并且信号传导和适应可以通过强制适应系统分开。这使得酵母渗透调节适合通过数学建模研究信号传导和细胞适应的系统特性。在调节系统的不同层面上进行的计算模拟和并行定量时间进程实验为全面理解提供了一块垫脚石,揭示了HOG途径如何将严格的反馈控制与信号传导能力的维持相结合。丰富的工具使酵母成为细胞渗透调节综合分析的合适模型。维持细胞水平衡是生命的基础。所有细胞,即使是多细胞生物中具有全生物体范围渗透调节的细胞,都有能力主动控制其水平衡。渗透调节包括维持适当的细胞内环境以进行生化过程以及维持细胞和生物体膨压的稳态过程。在实验室中,最方便将渗透调节系统作为对渗透压休克的反应来研究,渗透压休克会导致细胞外水活性快速而显著的变化。这些快速变化介导水外流(高渗休克),从而导致细胞收缩,或者介导水内流(低渗休克),导致细胞肿胀。酿酒酵母作为一种经历细胞外水活性缓慢和快速变化的自由生活生物体,已被证明是研究渗透调节潜在信号通路和调节过程的合适且遗传上易于处理的实验系统。尽管远未完善,但目前对酵母渗透调节的描述既广泛又详细(德纳达尔等人,2002年;霍曼,2002年;克利普等人,2005年)。使用数学模型结合信号传导和适应过程中不同分子过程的时间进程测量进行的模拟,使得能够阐明酵母渗透调节网络的首批系统特性。