Parmar J H, Bhartiya Sharad, Venkatesh K V
Department of Chemical Engineering, Indian Institute of Technology, Bombay, Powai, Mumbai 400076, India.
Phys Biol. 2009 Aug 6;6(3):036019. doi: 10.1088/1478-3975/6/3/036019.
Adaptation to osmotic shock in Saccharomyces cerevisiae is brought about by the activation of two independent signaling pathways, Sho1 and Sln1, which in turn trigger the high osmolarity glycerol (HOG) pathway. The HOG pathway thereby activates the transcription of Gpd1p, an enzyme necessary to synthesize glycerol. The production of glycerol brings about a change in the intracellular osmolarity leading to adaptation. We present a detailed mechanistic model for the response of the yeast to hyperosmotic shock. The model integrates the two branches, Sho1 and Sln1, of the HOG pathway and also includes the mitogen-activated protein kinase cascade, gene regulation and metabolism. Model simulations are consistent with known experimental results for wild-type strain, and Ste11Delta and Ssk1Delta mutant strains subjected to osmotic stress. Simulation results predict that both the branches contribute to the overall wild-type response for moderate osmotic shock, while under severe osmotic shock, the cell responds mainly through the Sln1 branch. The analysis shows that the Sln1 branch helps the cell in preventing cross-talk to other signaling pathways by inhibiting ste11ste50 activation and also by increasing the phosphorylation of Ste50. We show that the negative feedbacks to the Sho1 branch must be faster than those to the Sln1 branch to simultaneously achieve pathway specificity and adaptation during hyperosmotic shock. Sensitivity analysis revealed that the presence of both branches imparts robust behavior to the cell under osmoadaptation to perturbations.
酿酒酵母对渗透冲击的适应是由两条独立的信号通路Sho1和Sln1的激活引起的,这两条通路进而触发高渗甘油(HOG)通路。HOG通路从而激活Gpd1p的转录,Gpd1p是合成甘油所必需的一种酶。甘油的产生导致细胞内渗透压发生变化,从而实现适应。我们提出了一个详细的酵母对高渗冲击反应的机制模型。该模型整合了HOG通路的Sho1和Sln1两个分支,还包括丝裂原活化蛋白激酶级联反应、基因调控和代谢。模型模拟结果与野生型菌株以及遭受渗透胁迫的Ste11Delta和Ssk1Delta突变菌株的已知实验结果一致。模拟结果预测,在中度渗透冲击下,两个分支都对野生型的整体反应有贡献,而在严重渗透冲击下,细胞主要通过Sln1分支做出反应。分析表明,Sln1分支通过抑制ste11ste50的激活以及增加Ste50的磷酸化,帮助细胞防止与其他信号通路的串扰。我们表明,在高渗冲击期间,对Sho1分支的负反馈必须比对Sln1分支的负反馈更快,才能同时实现通路特异性和适应性。敏感性分析表明,在渗透适应过程中,两个分支的存在赋予细胞对扰动的稳健行为。