Vanícek Jirí, Miller William H
Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, USA.
J Chem Phys. 2007 Sep 21;127(11):114309. doi: 10.1063/1.2768930.
The quantum instanton approximation is used to compute kinetic isotope effects for intramolecular hydrogen transfer in cis-1,3-pentadiene. Due to the importance of skeleton motions, this system with 13 atoms is a simple prototype for hydrogen transfer in enzymatic reactions. The calculation is carried out using thermodynamic integration with respect to the mass of the isotopes and a path integral Monte Carlo evaluation of relevant thermodynamic quantities. Efficient "virial" estimators are derived for the logarithmic derivatives of the partition function and the delta-delta correlation functions. These estimators require significantly fewer Monte Carlo samples since their statistical error does not increase with the number of discrete time slices in the path integral. The calculation treats all 39 degrees of freedom quantum mechanically and uses an empirical valence bond potential based on a molecular mechanics force field.
量子瞬子近似法用于计算顺式-1,3-戊二烯分子内氢转移的动力学同位素效应。由于骨架运动的重要性,这个拥有13个原子的体系是酶促反应中氢转移的一个简单原型。计算是通过对同位素质量进行热力学积分以及对相关热力学量进行路径积分蒙特卡罗评估来进行的。针对配分函数的对数导数和δ-δ关联函数,推导出了高效的“维里”估计量。这些估计量所需的蒙特卡罗样本显著减少,因为它们的统计误差不会随着路径积分中离散时间片的数量增加而增大。该计算对所有39个自由度进行量子力学处理,并使用基于分子力学力场的经验价键势。