Laboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingénierie Chimiques, École Polytechnique Fédérale de Lausanne (EPFL), CH-1015, Lausanne, Switzerland.
J Mol Model. 2010 Nov;16(11):1779-87. doi: 10.1007/s00894-010-0711-y. Epub 2010 Apr 30.
Recent experiments have confirmed the importance of nuclear quantum effects even in large biomolecules at physiological temperature. Here we describe how the path integral formalism can be used to describe rigorously the nuclear quantum effects on equilibrium and kinetic properties of molecules. Specifically, we explain how path integrals can be employed to evaluate the equilibrium (EIE) and kinetic (KIE) isotope effects, and the temperature dependence of the rate constant. The methodology is applied to the [1,5] sigmatropic hydrogen shift in pentadiene. Both the KIE and the temperature dependence of the rate constant confirm the importance of tunneling and other nuclear quantum effects as well as of the anharmonicity of the potential energy surface. Moreover, previous results on the KIE were improved by using a combination of a high level electronic structure calculation within the harmonic approximation with a path integral anharmonicity correction using a lower level method.
最近的实验证实了核量子效应的重要性,即使在生理温度下的大型生物分子中也是如此。在这里,我们描述了路径积分形式如何严格描述分子的平衡和动力学性质的核量子效应。具体来说,我们解释了如何使用路径积分来评估平衡(EIE)和动力学(KIE)同位素效应以及速率常数的温度依赖性。该方法应用于戊二烯中的[1,5] σ迁移。KIE 和速率常数的温度依赖性都证实了隧穿和其他核量子效应以及势能面的非谐性的重要性。此外,通过使用在谐波近似下的高水平电子结构计算与使用较低水平方法的路径积分非谐性校正的组合,改进了先前关于 KIE 的结果。