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环境对溪流细菌群落景观尺度生物地理学的控制作用。

Environmental controls on the landscape-scale biogeography of stream bacterial communities.

作者信息

Fierer Noah, Morse Jennifer L, Berthrong Sean T, Bernhardt Emily S, Jackson Robert B

机构信息

Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, Colorado, USA.

出版信息

Ecology. 2007 Sep;88(9):2162-73. doi: 10.1890/06-1746.1.

Abstract

We determined the biogeographical distributions of stream bacteria and the biogeochemical factors that best explained heterogeneity for 23 locations within the Hubbard Brook watershed, a 3000-ha forested watershed in New Hampshire, USA. Our goal was to assess the factor, or set of factors, responsible for generating the biogeographical patterns exhibited by microorganisms at the landscape scale. We used DNA fingerprinting to characterize bacteria inhabiting fine benthic organic matter (FBOM) because of their important influence on stream nutrient dynamics. Across the watershed, streams of similar pH had similar FBOM bacterial communities. Streamwater pH was the single variable most strongly correlated with the relative distance between communities (Spearman's p = 0.66, P < 0.001) although there were other contributing factors, including the quality of the fine benthic organic matter and the amount of dissolved organic carbon and nitrogen in the stream water (P < 0.05 for each). There was no evidence of an effect of geographic distance on bacterial community composition, suggesting that dispersal limitation has little influence on the observed biogeographical patterns in streams across this landscape. Cloning and sequencing of small-subunit rRNA genes confirmed the DNA fingerprinting results and revealed strong shifts among bacterial groups along the pH gradient. With an increase in streamwater pH, the abundance of acidobacteria in the FBOM bacterial community decreased (from 71% to 38%), and the abundance of proteobacteria increased (from 11% to 47%). Together these results suggest that microorganisms, like "macro"-organisms, do exhibit biogeographical patterns at the landscape scale and that these patterns may be predictable based on biogeochemical factors.

摘要

我们确定了溪流细菌的生物地理分布以及能最好解释美国新罕布什尔州一个3000公顷森林流域哈伯德布鲁克流域内23个地点异质性的生物地球化学因素。我们的目标是评估在景观尺度上导致微生物呈现生物地理模式的因素或因素集。由于其对溪流养分动态的重要影响,我们使用DNA指纹图谱来表征栖息在细底栖有机物质(FBOM)中的细菌。在整个流域,pH值相似的溪流具有相似的FBOM细菌群落。尽管存在其他影响因素,包括细底栖有机物质的质量以及溪水中溶解有机碳和氮的含量(各因素P < 0.05),但溪水pH值是与群落间相对距离相关性最强的单一变量(斯皮尔曼p = 0.66,P < 0.001)。没有证据表明地理距离对细菌群落组成有影响,这表明扩散限制对该景观中溪流观察到的生物地理模式影响很小。小亚基rRNA基因的克隆和测序证实了DNA指纹图谱的结果,并揭示了细菌类群沿pH梯度的强烈变化。随着溪水pH值的升高,FBOM细菌群落中酸杆菌的丰度降低(从71%降至38%),而变形菌的丰度增加(从11%增至47%)。这些结果共同表明,微生物与“宏观”生物一样,在景观尺度上确实呈现生物地理模式,并且这些模式可能基于生物地球化学因素进行预测。

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