Xia Youlin, Veeraraghavan Sudha, Zhu Qi, Gao Xiaolian
Department of Biology and Biochemistry, University of Houston, Houston, TX 77004, USA.
J Magn Reson. 2008 Jan;190(1):142-8. doi: 10.1016/j.jmr.2007.09.015. Epub 2007 Sep 22.
NOESY NMR spectra provide interproton distance information for a molecule in solution and the complete, unambiguous determination of NOESY spectral assignments is the basis for protein structure determination. High resolution NOESY can be obtained from (13)C and (15)N isotope edited four-dimensional (4D) data, but these experiments would normally require weeks to complete. We have applied a G-matrix Fourier transform and time-sharing (GFT-TS) NMR method for simultaneously acquiring two sets of 4D NOESY data. The implementation of the GFT-TS allows 2.5- to 5-fold reduction in experimental time without sacrificing spectral resolution as compared with that of 3D data. The (13)C, (15)N-edited GFT-TS (4,3)D H-N-CN-H NOESY (GFT dimensions are underlined and TS dimensions are in italics) provides convenient and unambiguous NOE assignments for HN/HN and HN/HC for a sample of 1.4 mM ubiquitin (76 amino acids, 8.5 kDa). We also provide a set of utility scripts for data processing and spectral assignment to facilitate the use of GFT NMR. This method shows great promise for routine high quality NMR NOESY data collection for small to medium sized proteins.
NOESY核磁共振谱为溶液中的分子提供质子间距离信息,而NOESY谱峰归属的完整、明确测定是蛋白质结构测定的基础。高分辨率的NOESY可从(13)C和(15)N同位素编辑的四维(4D)数据中获得,但这些实验通常需要数周才能完成。我们应用了一种G矩阵傅里叶变换和分时(GFT-TS)核磁共振方法来同时采集两组4D NOESY数据。与3D数据相比,GFT-TS的实施可将实验时间减少2.5至5倍,同时不牺牲谱分辨率。(13)C、(15)N编辑的GFT-TS(4,3)D H-N-CN-H NOESY(GFT维度加下划线,TS维度用斜体表示)为1.4 mM泛素(76个氨基酸,8.5 kDa)样品的HN/HN和HN/HC提供了方便且明确的NOE归属。我们还提供了一组用于数据处理和谱峰归属的实用脚本,以促进GFT NMR的使用。该方法在为中小尺寸蛋白质进行常规高质量NMR NOESY数据采集方面显示出巨大潜力。