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无对角线 3D/4D HN、HN-TROSY-NOESY-TROSY。

Diagonal-free 3D/4D HN,HN-TROSY-NOESY-TROSY.

机构信息

NMR platform, CiC bioGUNE, Parque Tecnologico de Bizkaia, Ed. 800, 48160 Derio, Spain.

出版信息

J Am Chem Soc. 2010 Feb 24;132(7):2138-9. doi: 10.1021/ja910523q.


DOI:10.1021/ja910523q
PMID:20121126
Abstract

Structural biology by NMR spectroscopy relies on measuring interproton distances via NOE cross-signals in nuclear Overhauser effect spectroscopy (NOESY) spectra. In proteins, the subset of H(N)-H'(N) NOE contacts is most important for deriving initial structural models and for spectral assignment by "NOE walking". Here we present a fully optimized NMR experiment for measuring these pivotal contacts: diagonal-free 3D/4D HN,HN-TROSY-NOESY-TROSY. It combines all of the critical requirements for extracting the optimal H(N)-H'(N) distance information: the highest resolution by consistent transverse relaxation-optimized spectroscopy (TROSY) evolution, the largest spectral dispersion in two (15)N dimensions, and maximal coverage and purity through specific suppression of the intense diagonal signals that are the main source of overlap, artifacts, and bias in any NOESY spectrum. Most notably, diagonal suppression here comes without compromising the NOE cross-signal intensities. This optimized experiment appears to be ideal for a broad range of structural studies, particularly on large deuterated, partially unfolded, helical, and membrane proteins.

摘要

通过核磁共振波谱学的结构生物学依赖于通过核磁共振各向异性效应(NOESY)谱中的 NOE 交叉信号测量质子间距离。在蛋白质中,H(N)-H'(N)NOE 接触的子集对于推导初始结构模型和通过“NOE 漫步”进行光谱分配最为重要。在这里,我们提出了一种完全优化的用于测量这些关键接触的 NMR 实验:无对角线的 3D/4D HN,HN-TROSY-NOESY-TROSY。它结合了提取最佳 H(N)-H'(N)距离信息的所有关键要求:通过一致的横向弛豫优化光谱(TROSY)演化获得最高分辨率,在两个(15)N 维度上具有最大的光谱色散,以及通过特定抑制强烈的对角线信号实现最大的覆盖范围和纯度,对角线信号是任何 NOESY 谱中重叠、伪影和偏差的主要来源。最值得注意的是,这里的对角线抑制不会影响 NOE 交叉信号强度。这个优化的实验似乎非常适合广泛的结构研究,特别是在大氘代、部分展开、螺旋和膜蛋白上。

相似文献

[1]
Diagonal-free 3D/4D HN,HN-TROSY-NOESY-TROSY.

J Am Chem Soc. 2010-2-24

[2]
TROSY-based correlation and NOE spectroscopy for NMR structural studies of large proteins.

Methods Mol Biol. 2004

[3]
Determination of backbone angle psi in proteins using a TROSY-based alpha/beta-HN(CO)CA-J experiment.

J Magn Reson. 2000-10

[4]
High-resolution four-dimensional 1H-13C NOE spectroscopy using methyl-TROSY, sparse data acquisition, and multidimensional decomposition.

J Am Chem Soc. 2005-3-2

[5]
Very simple combination of TROSY, CRINEPT and multiple quantum coherence for signal enhancement in an HN(CO)CA experiment for large proteins.

J Magn Reson. 2011-2-3

[6]
Fast (4,3)D GFT-TS NMR for NOESY of small to medium-sized proteins.

J Magn Reson. 2008-1

[7]
Three-dimensional protein NMR TROSY-type (15)N-resolved (1)H(N)-(1)H(N) NOESY spectra with diagonal peak suppression.

J Magn Reson. 2000-1

[8]
The 3D NOESY-[(1)H,(15)N,(1)H]-ZQ-TROSY NMR experiment with diagonal peak suppression.

Proc Natl Acad Sci U S A. 1999-8-17

[9]
General method for suppression of diagonal peaks in heteronuclear-edited NOESY spectroscopy.

J Am Chem Soc. 2004-11-24

[10]
Transverse relaxation optimized 3D and 4D 15n/15N separated NOESY experiments of 15N labeled proteins.

J Biomol NMR. 2000-11

引用本文的文献

[1]
DNAJB6 mutants display toxic gain of function through unregulated interaction with Hsp70 chaperones.

Nat Commun. 2023-11-3

[2]
Four-dimensional NOE-NOE spectroscopy of SARS-CoV-2 Main Protease to facilitate resonance assignment and structural analysis.

Magn Reson (Gott). 2021-4-13

[3]
Enhancing Compression Level for More Efficient Compressed Sensing and Other Lessons from NMR Spectroscopy.

Sensors (Basel). 2020-2-28

[4]
Spin-echo based diagonal peak suppression in solid-state MAS NMR homonuclear chemical shift correlation spectra.

J Magn Reson. 2018-2

[5]
Solid-state NMR structure determination from diagonal-compensated, sparsely nonuniform-sampled 4D proton-proton restraints.

J Am Chem Soc. 2014-8-6

[6]
4D Non-uniformly sampled C,C-NOESY experiment for sequential assignment of 13C, 15N-labeled RNAs.

J Biomol NMR. 2013-8-21

[7]
A general method for diagonal peak suppression in homonuclear correlated NMR spectra by spatially and frequency selective pulses.

J Magn Reson. 2013-4-22

[8]
Selective diagonal-free (13)C, (13)C-edited aliphatic-aromatic NOESY experiment with non-uniform sampling.

J Biomol NMR. 2013-5-9

[9]
Efficient acquisition of high-resolution 4-D diagonal-suppressed methyl-methyl NOESY for large proteins.

J Magn Reson. 2012-3-9

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