DD37E DNA转座子在蚊子中的进化与水平转移
Evolution and horizontal transfer of a DD37E DNA transposon in mosquitoes.
作者信息
Biedler James K, Shao Hongguang, Tu Zhijian
机构信息
Department of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, USA.
出版信息
Genetics. 2007 Dec;177(4):2553-8. doi: 10.1534/genetics.107.081109. Epub 2007 Oct 18.
Abstract
ITmD37E, a unique class II transposable element (TE) with an ancient origin, appears to have been involved in multiple horizontal transfers in mosquitoes as ITmD37E sequences from 10 mosquito species of five genera share high nucleotide (nt) identities. For example, ITmD37E sequences from Aedes aegypti and Anopheles gambiae, which have an estimated common ancestor of 145-200 million years ago, display 92% nt identity. The comparison of ITmD37E and host mosquito phylogenies shows a lack of congruence. The wide distribution of conserved ITmD37Es in mosquitoes and the presence of intact copies suggest that this element may have been recently active.
摘要
ITmD37E是一种起源古老的独特II类转座元件（TE），由于来自五个属的10种蚊子的ITmD37E序列具有较高的核苷酸（nt）同一性，它似乎参与了蚊子中的多次水平转移。例如，埃及伊蚊和冈比亚按蚊的ITmD37E序列，它们估计有1.45 - 2亿年前的共同祖先，显示出92%的核苷酸同一性。ITmD37E与宿主蚊子系统发育的比较显示缺乏一致性。保守的ITmD37E在蚊子中的广泛分布以及完整拷贝的存在表明该元件可能最近仍有活性。
相似文献
1
Evolution and horizontal transfer of a DD37E DNA transposon in mosquitoes.
Genetics. 2007 Dec;177(4):2553-8. doi: 10.1534/genetics.107.081109. Epub 2007 Oct 18.
2
Next-generation sequencing reveals recent horizontal transfer of a DNA transposon between divergent mosquitoes.
PLoS One. 2011 Feb 10;6(2):e16743. doi: 10.1371/journal.pone.0016743.
3
Mosquito genomes are frequently invaded by transposable elements through horizontal transfer.
PLoS Genet. 2020 Nov 30;16(11):e1008946. doi: 10.1371/journal.pgen.1008946. eCollection 2020 Nov.
4
Expanding the diversity of the IS630-Tc1-mariner superfamily: discovery of a unique DD37E transposon and reclassification of the DD37D and DD39D transposons.
Genetics. 2001 Nov;159(3):1103-15. doi: 10.1093/genetics/159.3.1103.
5
Horizontal transmission of an R4 clade non-long terminal repeat retrotransposon between the divergent Aedes and Anopheles mosquito genera.
Insect Mol Biol. 2015 Jun;24(3):331-7. doi: 10.1111/imb.12160. Epub 2015 Jan 23.
6
The Juan non-LTR retrotransposon in mosquitoes: genomic impact, vertical transmission and indications of recent and widespread activity.
BMC Evol Biol. 2007 Jul 9;7:112. doi: 10.1186/1471-2148-7-112.
7
Genomic and evolutionary analyses of Tango transposons in Aedes aegypti, Anopheles gambiae and other mosquito species.
Insect Mol Biol. 2007 Aug;16(4):411-21. doi: 10.1111/j.1365-2583.2007.00735.x. Epub 2007 May 16.
8
The origin and evolution of mosquito APE retroposons.
Mol Biol Evol. 2005 Nov;22(11):2190-7. doi: 10.1093/molbev/msi217. Epub 2005 Jul 20.
9
The tempo and mode of evolution of transposable elements as revealed by molecular phylogenies reconstructed from mosquito genomes.
Evolution. 2009 Dec;63(12):3136-46. doi: 10.1111/j.1558-5646.2009.00788.x. Epub 2009 Jul 28.
10
Transposable elements in mosquitoes.
Cytogenet Genome Res. 2005;110(1-4):500-9. doi: 10.1159/000084983.
引用本文的文献
1
Mosquito genomes are frequently invaded by transposable elements through horizontal transfer.
PLoS Genet. 2020 Nov 30;16(11):e1008946. doi: 10.1371/journal.pgen.1008946. eCollection 2020 Nov.
2
Genetic exchange in eukaryotes through horizontal transfer: connected by the mobilome.
Mob DNA. 2018 Jan 31;9:6. doi: 10.1186/s13100-018-0112-9. eCollection 2018.
3
TRT, a Vertebrate and Protozoan Tc1-Like Transposon: Current Activity and Horizontal Transfer.
Genome Biol Evol. 2016 Oct 5;8(9):2994-3005. doi: 10.1093/gbe/evw213.
4
Tc1-like transposable elements in plant genomes.
Mob DNA. 2014 Jun 3;5:17. doi: 10.1186/1759-8753-5-17. eCollection 2014.
5
Birth of three stowaway-like MITE families via microhomology-mediated miniaturization of a Tc1/Mariner element in the yellow fever mosquito.
Genome Biol Evol. 2013;5(10):1937-48. doi: 10.1093/gbe/evt146.
6
Diversity of transposable elements and repeats in a 600 kb region of the fly Calliphora vicina.
Mob DNA. 2013 Apr 3;4(1):13. doi: 10.1186/1759-8753-4-13.
7
Evaluating phylogenetic congruence in the post-genomic era.
Genome Biol Evol. 2011;3:571-87. doi: 10.1093/gbe/evr050. Epub 2011 Jun 28.
8
Next-generation sequencing reveals recent horizontal transfer of a DNA transposon between divergent mosquitoes.
PLoS One. 2011 Feb 10;6(2):e16743. doi: 10.1371/journal.pone.0016743.
9
Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes.
Genome Biol. 2009 Feb 18;10(2):R22. doi: 10.1186/gb-2009-10-2-r22.
本文引用的文献
1
Genomic and evolutionary analyses of Tango transposons in Aedes aegypti, Anopheles gambiae and other mosquito species.
Insect Mol Biol. 2007 Aug;16(4):411-21. doi: 10.1111/j.1365-2583.2007.00735.x. Epub 2007 May 16.
2
Acquisition of Host Cell DNA Sequences by Baculoviruses: Relationship Between Host DNA Insertions and FP Mutants of Autographa californica and Galleria mellonella Nuclear Polyhedrosis Viruses.
J Virol. 1983 Aug;47(2):287-300. doi: 10.1128/JVI.47.2.287-300.1983.
3
Analysis of the complete mitochondrial DNA from Anopheles funestus: an improved dipteran mitochondrial genome annotation and a temporal dimension of mosquito evolution.
Mol Phylogenet Evol. 2006 May;39(2):417-23. doi: 10.1016/j.ympev.2006.01.006. Epub 2006 Feb 13.
4
Diverse DNA transposons in rotifers of the class Bdelloidea.
Proc Natl Acad Sci U S A. 2005 Aug 16;102(33):11781-6. doi: 10.1073/pnas.0505333102. Epub 2005 Aug 4.
5
PDA: a pipeline to explore and estimate polymorphism in large DNA databases.
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W166-9. doi: 10.1093/nar/gkh428.
6
Factors that affect the horizontal transfer of transposable elements.
Curr Issues Mol Biol. 2004 Jan;6(1):57-71.
7
Gene vector and transposable element behavior in mosquitoes.
J Exp Biol. 2003 Nov;206(Pt 21):3823-34. doi: 10.1242/jeb.00638.
8
MrBayes 3: Bayesian phylogenetic inference under mixed models.
Bioinformatics. 2003 Aug 12;19(12):1572-4. doi: 10.1093/bioinformatics/btg180.
9
Germ-line transformation of the South American malaria vector, Anopheles albimanus, with a piggyBac/EGFP transposon vector is routine and highly efficient.
Insect Mol Biol. 2002 Aug;11(4):291-7. doi: 10.1046/j.1365-2583.2002.00336.x.
10
Development and applications of transgenesis in the yellow fever mosquito, Aedes aegypti.
Mol Biochem Parasitol. 2002 Apr 30;121(1):1-10. doi: 10.1016/s0166-6851(02)00028-2.
Zotero 插件