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轴向配体对血红素降解过程的非单纯效应:对胆绿素原水解途径的理论研究。

Noninnocent effect of axial ligand on the heme degradation process: a theoretical approach to hydrolysis pathway of verdoheme to biliverdin.

作者信息

Jamaat Parisa R, Safari Nasser, Ghiasi Mina, Naghavi S Shahab-al-din, Zahedi Mansour

机构信息

Department of Chemistry, Faculty of Science, Shahid Beheshti University, Evin, 19839-63113, Tehran, Iran.

出版信息

J Biol Inorg Chem. 2008 Jan;13(1):121-32. doi: 10.1007/s00775-007-0308-9. Epub 2007 Oct 23.

Abstract

Conversion of iron(II) verdoheme to iron(II) biliverdin in the presence of hydroxyl ion as a nucleophile and imidazole, pyridine, water, hydroxyl, cyanide, phenolate, chloride, thiolate and imidazolate as axial ligands was investigated using the B3LYP method and the 6-31G basis set. In the five-coordinated pathway the reactants and products are in the ground triplet state. In this path, hydroxyl ion directly attacks the macrocycle. The exothermic energy for addition of hydroxyl ion to iron(II) verdoheme with various ligands is 169.55, 166.34 and 164 kcal mol(-1) for water, pyridine and imidazole, energies which are around 30-60 kcal mol(-1) more exothermic than those for the other axial ligands used in this study. Therefore, imidazole, water and pyridine axial ligands can facilitate hydrolytic cleavage of iron(II) verdoheme to form open-chained helical iron(II) biliverdin complexes. The activation barrier for the conversion of iron(II) verdoheme hydroxyl species to the iron(II) biliverdin complex is estimated to be 5.2, 4.2, 4.35, 13.76 and 14.05 kcal mol(-1) for imidazole, water, cyanide, thiolate and imidazolate, respectively.

摘要

使用B3LYP方法和6-31G基组,研究了在作为亲核试剂的氢氧根离子以及咪唑、吡啶、水、羟基、氰化物、酚盐、氯离子、硫醇盐和咪唑盐作为轴向配体存在的情况下,亚铁绿血红素向亚铁胆绿素的转化。在五配位途径中,反应物和产物处于基态三重态。在这条途径中,氢氧根离子直接攻击大环。对于水、吡啶和咪唑,向带有各种配体的亚铁绿血红素中添加氢氧根离子的放热能量分别为169.55、166.34和164 kcal mol⁻¹,这些能量比本研究中使用的其他轴向配体的放热能量高约30 - 60 kcal mol⁻¹。因此,咪唑、水和吡啶轴向配体可以促进亚铁绿血红素的水解裂解,以形成开链螺旋亚铁胆绿素配合物。对于咪唑、水、氰化物、硫醇盐和咪唑盐,亚铁绿血红素羟基物种转化为亚铁胆绿素配合物的活化能垒估计分别为5.2、4.2、4.35、13.76和14.05 kcal mol⁻¹。

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