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关于轴向配体在血红素蛋白中的作用:一项理论研究。

On the role of the axial ligand in heme proteins: a theoretical study.

作者信息

Rydberg Patrik, Sigfridsson Emma, Ryde Ulf

机构信息

Department of Theoretical Chemistry, Chemical Centre, Lund University, P.O. Box 124, 221 00 Lund, Sweden.

出版信息

J Biol Inorg Chem. 2004 Mar;9(2):203-23. doi: 10.1007/s00775-003-0515-y. Epub 2004 Jan 15.

Abstract

We present a systematic investigation of how the axial ligand in heme proteins influences the geometry, electronic structure, and spin states of the active site, and the energies of the reaction cycles. Using the density functional B3LYP method and medium-sized basis sets, we have compared models with His, His+Asp, Cys, Tyr, and Tyr+Arg as found in myoglobin and hemoglobin, peroxidases, cytochrome P450, and heme catalases, respectively. We have studied 12 reactants and intermediates of the reaction cycles of these enzymes, including complexes with H(2)O, OH(-), O(2-), CH(3)OH, O(2), H(2)O(2), and HO(2)(-) in various formal oxidation states of the iron ion (II to V). The results show that His gives ~0.6 V higher reduction potentials than the other ligands. In particular, it is harder to reduce and protonate the O(2) complex with His than with the other ligands, in accordance with the O(2) carrier function of globins and the oxidative chemistry of the other proteins. For most properties, the trend Cys<Tyr<Tyr+Arg<His+Asp<His is found, reflecting the donor capacity of the various ligands. Thus, it is easier to reduce compound I with a His+Asp ligand than with a Cys ligand, in accordance with the one-electron chemistry of peroxidases and the hydroxylation reactions of cytochromes P450. However, the Tyr complexes have an unusually low affinity for all neutral ligands, giving them a slightly enhanced driving force in the oxidation of H(2)O(2) by compound I.

摘要

我们对血红素蛋白中的轴向配体如何影响活性位点的几何结构、电子结构和自旋态以及反应循环的能量进行了系统研究。使用密度泛函B3LYP方法和中等规模基组,我们分别比较了在肌红蛋白和血红蛋白、过氧化物酶、细胞色素P450和血红素过氧化氢酶中发现的以组氨酸(His)、组氨酸+天冬氨酸(His+Asp)、半胱氨酸(Cys)、酪氨酸(Tyr)以及酪氨酸+精氨酸(Tyr+Arg)为轴向配体的模型。我们研究了这些酶反应循环中的12种反应物和中间体,包括铁离子处于不同形式氧化态(II至V)时与水(H₂O)、氢氧根离子(OH⁻)、超氧阴离子(O₂⁻)、甲醇(CH₃OH)、氧气(O₂)、过氧化氢(H₂O₂)和超氧羟自由基(HO₂⁻)形成的配合物。结果表明,组氨酸赋予的还原电位比其他配体高约0.6 V。特别是,与其他配体相比,组氨酸与氧气形成的配合物更难被还原和质子化,这与珠蛋白的氧气载体功能以及其他蛋白质的氧化化学性质相符。对于大多数性质,发现其趋势为半胱氨酸<酪氨酸<酪氨酸+精氨酸<组氨酸+天冬氨酸<组氨酸,这反映了各种配体的给体能力。因此,根据过氧化物酶的单电子化学性质和细胞色素P450的羟基化反应,带有组氨酸+天冬氨酸配体的化合物I比带有半胱氨酸配体的化合物I更容易被还原。然而,酪氨酸配合物对所有中性配体的亲和力异常低,这使得它们在化合物I氧化过氧化氢时具有略微增强的驱动力。

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