Wilton David J, Tunnicliffe Richard B, Kamatari Yuji O, Akasaka Kazuyuki, Williamson Mike P
Department of Molecular Biology and Biotechnology, University of Sheffield, Firth Court, Western Bank, Sheffield S10 2TN, United Kingdom.
Proteins. 2008 May 15;71(3):1432-40. doi: 10.1002/prot.21832.
The solution structure of the GB1 domain of protein G at a pressure of 2 kbar is presented. The structure was calculated as a change from an energy-minimised low-pressure structure using (1)H chemical shifts. Two separate changes can be characterised: a compression/distortion, which is linear with pressure; and a stabilisation of an alternative folded state. On application of pressure, linear chemical shift changes reveal that the backbone structure changes by about 0.2 A root mean square, and is compressed by about 1% overall. The alpha-helix compresses, particularly at the C-terminal end, and moves toward the beta-sheet, while the beta-sheet is twisted, with the corners closest to the alpha-helix curling up towards it. The largest changes in structure are along the second beta-strand, which becomes more twisted. This strand is where the protein binds to IgG. Curved chemical shift changes with pressure indicate that high pressure also populates an alternative structure with a distortion towards the C-terminal end of the helix, which is likely to be caused by insertion of a water molecule.
本文给出了在2千巴压力下蛋白质G的GB1结构域的溶液结构。该结构是通过使用(1)H化学位移,从能量最小化的低压结构变化计算得出的。可以表征出两个单独的变化:一个是压缩/变形,它与压力呈线性关系;另一个是替代折叠态的稳定化。施加压力时,线性化学位移变化表明主链结构的均方根变化约为0.2 Å,总体压缩约1%。α螺旋发生压缩,特别是在C末端,并向β折叠移动,而β折叠发生扭曲,最靠近α螺旋的角向其卷曲。结构变化最大的是沿着第二条β链,它变得更加扭曲。这条链是蛋白质与IgG结合的部位。随压力呈曲线变化的化学位移表明,高压还使一种向螺旋C末端扭曲的替代结构增多,这可能是由一个水分子的插入导致的。