• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

Obtaining the Morse parameter for large bond-stretching using Murrell-Sorbie parameters.

作者信息

Lim Teik-Cheng

机构信息

School of Science and Technology, SIM University, 535A Clementi Road, S 599490 Singapore, Singapore.

出版信息

J Mol Model. 2008 Feb;14(2):103-8. doi: 10.1007/s00894-007-0262-z. Epub 2007 Dec 21.

DOI:10.1007/s00894-007-0262-z
PMID:18157677
Abstract

Although the second derivative approach has been shown to provide good parameter relationships between any two interatomic potential functions, these relations are valid only at and near the equilibrium point. Arising from the significant discrepancy between connected potential functions for large stretching of covalent bonds by the second derivative approach, an integral approach is developed herein. By equating interatomic energy integral from equilibrium to bond dissociation, the overall discrepancy is minimized for that range between the Morse and Murrell-Sorbie potential functions. Plotted results reveal two observations. First of all, the second derivative approach is appropriate for bond compression and infinitesimal bond stretching, while the integral approach is more suitable when the extent of bond stretching is significant. Secondly, the Morse function exactly fits the Murrell-Sorbie curve when the Morse shape parameters based on the second derivative and integral approaches are equal. Hence a criterion for determining the accuracy level of Murrell-Sorbie parameters for conversion to Morse parameter is established. Finally, a demonstration was made for cases where a clear discrepancy was observed in the potential energy curves. It was found that the integral approach gives a more conservative and more realistic interatomic force curve than those of derivative approach.

摘要

相似文献

1
Obtaining the Morse parameter for large bond-stretching using Murrell-Sorbie parameters.
J Mol Model. 2008 Feb;14(2):103-8. doi: 10.1007/s00894-007-0262-z. Epub 2007 Dec 21.
2
Extended Morse function model for angle-dependent hydrogen bond in protein-protein interactions.蛋白质-蛋白质相互作用中角度相关氢键的扩展 Morse 函数模型。
J Phys Chem B. 2010 Mar 4;114(8):2980-7. doi: 10.1021/jp909983y.
3
Dynamic strength of molecularly bonded surfaces.分子键合表面的动态强度
J Chem Phys. 2006 Nov 21;125(19):194702. doi: 10.1063/1.2372493.
4
[Study on the spectroscopic data and vibrational levels of the ground SiH+ molecular ion].
Guang Pu Xue Yu Guang Pu Fen Xi. 2014 Dec;34(12):3192-6.
5
Potential energy surface and unimolecular dynamics of stretched n-butane.拉伸正丁烷的势能面与单分子动力学
J Chem Phys. 2008 Sep 7;129(9):094701. doi: 10.1063/1.2969898.
6
Rapid quantum mechanical models for the computational estimation of C-H bond dissociation energies as a measure of metabolic stability.用于计算C-H键解离能以衡量代谢稳定性的快速量子力学模型。
Mol Pharm. 2004 Mar-Apr;1(2):128-35. doi: 10.1021/mp049977r.
7
Morse potential specific bond volume: a simple formula with applications to dimers and soft-hard slab slider.莫尔斯势特定键体积:一个应用于二聚体和软硬平板滑块的简单公式。
J Phys Condens Matter. 2022 May 11;34(28). doi: 10.1088/1361-648X/ac6a9b.
8
An approximate approach to DNA denaturation.一种DNA变性的近似方法。
Gen Physiol Biophys. 1995 Dec;14(6):491-502.
9
Proton dynamics in the strong chelate hydrogen bond of crystalline picolinic acid N-oxide. A new computational approach and infrared, raman and INS study.结晶烟酸N-氧化物强螯合氢键中的质子动力学。一种新的计算方法以及红外、拉曼和非弹性中子散射研究。
J Phys Chem A. 2008 Feb 21;112(7):1576-86. doi: 10.1021/jp077107u. Epub 2008 Jan 29.
10
Estimating the hydrogen bond energy.估算氢键能。
J Phys Chem A. 2010 Sep 9;114(35):9529-36. doi: 10.1021/jp103470e.

本文引用的文献

1
COSMIC(90): an improved molecular mechanics treatment of hydrocarbons and conjugated systems.COSMIC(90):一种改进的烃类和共轭体系的分子力学处理方法。
J Comput Aided Mol Des. 1991 Oct;5(5):475-504. doi: 10.1007/BF00125666.