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完成对1型蛇腺病毒的基因组分析,该病毒是新属腺病毒属中爬行动物谱系的代表。

Completion of the genome analysis of snake adenovirus type 1, a representative of the reptilian lineage within the novel genus Atadenovirus.

作者信息

Farkas Szilvia L, Harrach Balázs, Benko Mária

机构信息

Veterinary Medical Research Institute, Hungarian Academy of Sciences, H-1581, Budapest, P.O. Box 18, Hungary.

出版信息

Virus Res. 2008 Mar;132(1-2):132-9. doi: 10.1016/j.virusres.2007.11.009. Epub 2007 Dec 31.

Abstract

Genome sequencing and analysis of snake adenovirus type 1 (SnAdV-1), originating from corn snake, were completed. This is the first full genomic sequence of an adenovirus from reptilian hosts. The presence of characteristic genus-common genes and transcription units, showed that SnAdV-1 shares similar genome organisation with members of the recently established genus Atadenovirus. Three novel open reading frames of yet unknown functions were found. One of these seemed to be related to a putative gene, the so-called 105R that has recently been described from the genome of the tree shrew adenovirus. The other two putative genes were found to be unique for SnAdV-1. On phylogenetic trees, SnAdV-1 clustered within the atadenovirus clade. Thereby the hypothesis on the reptilian origin of atadenoviruses was further strengthened. Interestingly, however, one of the most striking features of atadenoviruses, namely the base content heavily biased towards A+T, is not characteristic for SnAdV-1 having a genome of balanced composition with a G+C value of 50.21%.

摘要

完成了源自玉米蛇的1型蛇腺病毒(SnAdV-1)的基因组测序与分析。这是来自爬行动物宿主的腺病毒的首个全基因组序列。特征性属共同基因和转录单元的存在表明,SnAdV-1与最近建立的Atadenovirus属的成员具有相似的基因组组织。发现了三个功能未知的新开放阅读框。其中一个似乎与一个推定基因有关,即最近从树鼩腺病毒基因组中描述的所谓105R。另外两个推定基因被发现是SnAdV-1独有的。在系统发育树上,SnAdV-1聚集在Atadenovirus进化枝内。由此,Atadenovirus病毒起源于爬行动物的假说得到了进一步加强。然而,有趣的是,Atadenovirus病毒最显著的特征之一,即碱基含量严重偏向A+T,对于基因组组成平衡、G+C值为50.21%的SnAdV-1来说并不具有代表性。

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