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使用Trugene HIV-1基因分型检测法评估用于HIV-1耐药性检测的干血斑样本。

Evaluation of dried blood spot specimens for HIV-1 drug-resistance testing using the Trugene HIV-1 genotyping assay.

作者信息

Hallack Renee, Doherty Lauren E, Wethers Judith A, Parker Monica M

机构信息

Wadsworth Center, New York State Department of Health, David Axelrod Institute, P.O. Box 22002, Albany, NY 12201-2002, United States.

出版信息

J Clin Virol. 2008 Apr;41(4):283-7. doi: 10.1016/j.jcv.2007.12.011. Epub 2008 Feb 20.


DOI:10.1016/j.jcv.2007.12.011
PMID:18243787
Abstract

BACKGROUND: Efforts to simplify the collection and shipping of specimens for HIV drug-resistance testing in resource-limited settings are needed as antiretroviral therapy increases worldwide. OBJECTIVE: To evaluate the reliability and practicality of using dried blood spots (DBS) for HIV-1 drug-resistance testing with the Trugene HIV-1 genotyping assay. STUDY DESIGN: Nucleic acids from 33 DBS and counterpart plasma specimens were extracted using the Nuclisens MiniMAG system and genotyped using the Trugene HIV-1 genotyping assay. Results were evaluated for sensitivity, accuracy, and reproducibility. RESULTS: A genotype was obtained for 33 (100%) plasma specimens and 26 (78.8%) DBS specimens, including 19 of 21 (90.5%) DBS specimens with a viral load greater than 6000 copies/mL. The mean nucleotide sequence concordance for the 940-nucleotide region evaluated was 99.3% for 26 DBS and plasma pairs, and 99.2% for 15 replicate DBS pairs. All 58 resistance-associated mutations detected in plasma specimens were detected in the corresponding DBS specimens. CONCLUSIONS: We show that DBS can be reliably and accurately genotyped using standard clinical assay methods, offering a practical alternative to plasma. This method is well suited for pre-treatment resistance testing and has potential for use in monitoring drug resistance in ART-treated individuals.

摘要

背景:随着抗逆转录病毒疗法在全球范围内的增加,在资源有限的环境中简化用于HIV耐药性检测的标本采集和运输工作是必要的。 目的:评估使用干血斑(DBS)通过Trugene HIV-1基因分型检测法进行HIV-1耐药性检测的可靠性和实用性。 研究设计:使用Nuclisens MiniMAG系统从33份DBS标本和对应的血浆标本中提取核酸,并使用Trugene HIV-1基因分型检测法进行基因分型。对结果进行敏感性、准确性和可重复性评估。 结果:33份(100%)血浆标本和26份(78.8%)DBS标本获得了基因型,包括21份病毒载量大于6000拷贝/mL的DBS标本中的19份(90.5%)。对于评估的940个核苷酸区域,26对DBS和血浆样本的平均核苷酸序列一致性为99.3%,15对重复DBS样本的平均核苷酸序列一致性为99.2%。在血浆标本中检测到的所有58个耐药相关突变均在相应的DBS标本中检测到。 结论:我们表明,使用标准临床检测方法可以可靠且准确地对DBS进行基因分型,为血浆提供了一种实用的替代方法。该方法非常适合治疗前耐药性检测,并有可能用于监测接受抗逆转录病毒治疗个体的耐药性。

相似文献

[1]
Evaluation of dried blood spot specimens for HIV-1 drug-resistance testing using the Trugene HIV-1 genotyping assay.

J Clin Virol. 2008-4

[2]
Development and optimization of an internally controlled dried blood spot assay for surveillance of human immunodeficiency virus type-1 drug resistance.

J Antimicrob Chemother. 2008-12

[3]
High concordance between HIV-1 drug resistance genotypes generated from plasma and dried blood spots in antiretroviral-experienced patients.

AIDS. 2007-11-30

[4]
Dried blood spots perform well in viral load monitoring of patients who receive antiretroviral treatment in rural Tanzania.

Clin Infect Dis. 2009-9-15

[5]
HIV-1 drug resistance surveillance using dried whole blood spots.

Antivir Ther. 2007

[6]
Dried blood spot specimens are a suitable alternative sample type for HIV-1 viral load measurement and drug resistance genotyping in patients receiving first-line antiretroviral therapy.

Clin Infect Dis. 2012-3-12

[7]
Effect of storage conditions of dried plasma and blood spots on HIV-1 RNA quantification and PCR amplification for drug resistance genotyping.

J Antimicrob Chemother. 2010-6-11

[8]
Dried blood spots for HIV-1 drug resistance and viral load testing: A review of current knowledge and WHO efforts for global HIV drug resistance surveillance.

AIDS Rev. 2010

[9]
Correlation between HIV-1 viral load quantification in plasma, dried blood spots, and dried plasma spots using the Roche COBAS Taqman assay.

J Clin Virol. 2009-12-4

[10]
A sensitive genotyping assay for detection of drug resistance mutations in reverse transcriptase of HIV-1 subtypes B and C in samples stored as dried blood spots or frozen RNA extracts.

J Virol Methods. 2006-9

引用本文的文献

[1]
HIV-1 drug resistance genotyping success rates and correlates of Dried-blood spots and plasma specimen genotyping failure in a resource-limited setting.

BMC Infect Dis. 2022-5-17

[2]
HIV-2 Drug Resistance Genotyping from Dried Blood Spots.

J Clin Microbiol. 2020-12-17

[3]
Next-Generation Sequencing for HIV Drug Resistance Testing: Laboratory, Clinical, and Implementation Considerations.

Viruses. 2020-6-5

[4]
Diagnosis of Human Immunodeficiency Virus Infection.

Clin Microbiol Rev. 2018-11-28

[5]
Improved prediction of gestational hypertension by inclusion of placental growth factor and pregnancy associated plasma protein-a in a sample of Ghanaian women.

Reprod Health. 2018-3-27

[6]
High Levels of Dual-Class Drug Resistance in HIV-Infected Children Failing First-Line Antiretroviral Therapy in Southern Ethiopia.

Viruses. 2018-2-1

[7]
Alternative Sample Types for HIV-1 Antiretroviral Drug Resistance Testing.

J Infect Dis. 2017-12-1

[8]
Use of Dried Plasma Spots for HIV-1 Viral Load Determination and Drug Resistance Genotyping in Mexican Patients.

Biomed Res Int. 2015

[9]
HemaSpot, a Novel Blood Storage Device for HIV-1 Drug Resistance Testing.

J Clin Microbiol. 2016-1

[10]
Stability of HIV-1 Nucleic Acids in Dried Blood Spot Samples for HIV-1 Drug Resistance Genotyping.

PLoS One. 2015-7-6

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