Hallack Renee, Doherty Lauren E, Wethers Judith A, Parker Monica M
Wadsworth Center, New York State Department of Health, David Axelrod Institute, P.O. Box 22002, Albany, NY 12201-2002, United States.
J Clin Virol. 2008 Apr;41(4):283-7. doi: 10.1016/j.jcv.2007.12.011. Epub 2008 Feb 20.
BACKGROUND: Efforts to simplify the collection and shipping of specimens for HIV drug-resistance testing in resource-limited settings are needed as antiretroviral therapy increases worldwide. OBJECTIVE: To evaluate the reliability and practicality of using dried blood spots (DBS) for HIV-1 drug-resistance testing with the Trugene HIV-1 genotyping assay. STUDY DESIGN: Nucleic acids from 33 DBS and counterpart plasma specimens were extracted using the Nuclisens MiniMAG system and genotyped using the Trugene HIV-1 genotyping assay. Results were evaluated for sensitivity, accuracy, and reproducibility. RESULTS: A genotype was obtained for 33 (100%) plasma specimens and 26 (78.8%) DBS specimens, including 19 of 21 (90.5%) DBS specimens with a viral load greater than 6000 copies/mL. The mean nucleotide sequence concordance for the 940-nucleotide region evaluated was 99.3% for 26 DBS and plasma pairs, and 99.2% for 15 replicate DBS pairs. All 58 resistance-associated mutations detected in plasma specimens were detected in the corresponding DBS specimens. CONCLUSIONS: We show that DBS can be reliably and accurately genotyped using standard clinical assay methods, offering a practical alternative to plasma. This method is well suited for pre-treatment resistance testing and has potential for use in monitoring drug resistance in ART-treated individuals.
背景:随着抗逆转录病毒疗法在全球范围内的增加,在资源有限的环境中简化用于HIV耐药性检测的标本采集和运输工作是必要的。 目的:评估使用干血斑(DBS)通过Trugene HIV-1基因分型检测法进行HIV-1耐药性检测的可靠性和实用性。 研究设计:使用Nuclisens MiniMAG系统从33份DBS标本和对应的血浆标本中提取核酸,并使用Trugene HIV-1基因分型检测法进行基因分型。对结果进行敏感性、准确性和可重复性评估。 结果:33份(100%)血浆标本和26份(78.8%)DBS标本获得了基因型,包括21份病毒载量大于6000拷贝/mL的DBS标本中的19份(90.5%)。对于评估的940个核苷酸区域,26对DBS和血浆样本的平均核苷酸序列一致性为99.3%,15对重复DBS样本的平均核苷酸序列一致性为99.2%。在血浆标本中检测到的所有58个耐药相关突变均在相应的DBS标本中检测到。 结论:我们表明,使用标准临床检测方法可以可靠且准确地对DBS进行基因分型,为血浆提供了一种实用的替代方法。该方法非常适合治疗前耐药性检测,并有可能用于监测接受抗逆转录病毒治疗个体的耐药性。
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