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一种白腐菌漆酶的近原子分辨率结构。

A near atomic resolution structure of a Melanocarpus albomyces laccase.

作者信息

Hakulinen N, Andberg M, Kallio J, Koivula A, Kruus K, Rouvinen J

机构信息

Department of Chemistry, University of Joensuu, Yliopistonkatu 7, P.O. Box 111, FIN-80101 Joensuu, Finland.

出版信息

J Struct Biol. 2008 Apr;162(1):29-39. doi: 10.1016/j.jsb.2007.12.003. Epub 2007 Dec 28.

Abstract

We have solved a crystal structure from Melanocarpus albomyces laccase expressed in the filamentous fungus Trichoderma reesei (rMaL) at 1.3A resolution by using synchrotron radiation at 100K. At the moment, this is the highest resolution that has been attained for any multicopper oxidase. The present structure confirmed our earlier proposal regarding the dynamic behaviour of the copper cluster. Thermal ellipsoids of copper atoms indicated movements of trinuclear site coppers. The direction of the type-3 copper motion was perpendicular to the type-2 copper. In addition, the structure at 1.3A resolution allowed us to describe important solvent cavities of the enzyme and the structure is also compared with other known multicopper oxidases. T2 and T3 solvent cavities, and a putative SDS-gate, formed by Ser142, Ser510 and the C-terminal Asp556 of rMaL, are described. We also observed a 2-oxohistidine, an oxidized histidine, possibly caused by a metal-catalysed oxidation by the trinuclear site coppers. To our knowledge, this is the first time that 2-oxohistidine has been observed in a protein crystal structure.

摘要

我们利用100K下的同步辐射,以1.3埃的分辨率解析了在丝状真菌里氏木霉中表达的黑孢块菌漆酶(rMaL)的晶体结构。目前,这是所有多铜氧化酶所达到的最高分辨率。当前结构证实了我们之前关于铜簇动态行为的提议。铜原子的热椭球体表明三核位点铜的移动。3型铜的移动方向垂直于2型铜。此外,1.3埃分辨率的结构使我们能够描述该酶的重要溶剂腔,并将该结构与其他已知的多铜氧化酶进行比较。描述了由rMaL的Ser142、Ser510和C端Asp556形成的T2和T3溶剂腔以及一个假定的SDS门。我们还观察到一个2-氧代组氨酸,即一个氧化的组氨酸,可能是由三核位点铜的金属催化氧化引起的。据我们所知,这是首次在蛋白质晶体结构中观察到2-氧代组氨酸。

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