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含有完整铜离子的硬孔菌漆酶结构揭示了T3铜对的不对称排列。

The structure of Rigidoporus lignosus Laccase containing a full complement of copper ions, reveals an asymmetrical arrangement for the T3 copper pair.

作者信息

Garavaglia Silvia, Cambria Maria Teresa, Miglio Marco, Ragusa Santa, Iacobazzi Vito, Palmieri Ferdinando, D'Ambrosio Chiara, Scaloni Andrea, Rizzi Menico

机构信息

DiSCAFF-INFM, University of Piemonte Orientale A. Avogadro, 28100 Novara, Italy.

出版信息

J Mol Biol. 2004 Oct 1;342(5):1519-31. doi: 10.1016/j.jmb.2004.07.100.

Abstract

Laccase is a multicopper blue oxidase that couples the four-electron reduction of oxygen with the oxidation of a broad range of organic substrates, including phenols and arylamines. The enzyme is the object of intense biotechnological research, due to its employment in bioremediation of soils and water as well as in other biotechnological applications. We report here the cDNA and protein sequences, the post-translational modifications, the crystallization and X-ray structure determination of a laccase from the white-rot fungus Rigidoporus lignosus. The amino acid residues sequence deduced from cDNA clearly identified a pre-sequence of 21 residues representing the signal for extra-cellular localization. Mass spectrometry analysis performed on the salvage enzyme, confirmed the deduced sequence and precisely mapped two glycosylation sites at Asn337 and Asn435, determining the nature of the bound glycosidic moieties. The crystal structure was determined at 1.7A resolution from perfectly hemihedrally twinned crystals, by molecular replacement technique. While the overall structure closely resembled those reported for other fungal laccases, the analysis of the T2/T3 trinuclear cluster revealed an unprecedented coordination sphere for the T3 copper pair. No bridging oxygen ligand was present between the two T3 copper ions, which were no longer symmetrically coordinated. The observed structure could represent an intermediate along the process of four-electron reduction of oxygen to water taking place at the trinuclear copper cluster.

摘要

漆酶是一种多铜蓝色氧化酶,它将氧气的四电子还原与多种有机底物(包括酚类和芳胺)的氧化偶联起来。由于其在土壤和水的生物修复以及其他生物技术应用中的作用,该酶是深入生物技术研究的对象。我们在此报告来自白腐真菌硬孔菌的一种漆酶的cDNA和蛋白质序列、翻译后修饰、结晶以及X射线结构测定。从cDNA推导的氨基酸残基序列清楚地确定了一个21个残基的前序列,它代表细胞外定位信号。对纯化酶进行的质谱分析证实了推导序列,并精确地在Asn337和Asn435处定位了两个糖基化位点,确定了结合糖苷部分的性质。通过分子置换技术,从完美半面孪晶晶体中以1.7埃分辨率确定了晶体结构。虽然整体结构与其他真菌漆酶报道的结构非常相似,但对T2/T3三核簇的分析揭示了T3铜对前所未有的配位球。在两个T3铜离子之间不存在桥连氧配体,它们不再对称配位。观察到的结构可能代表在三核铜簇处发生的氧气四电子还原为水的过程中的一个中间体。

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