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来自发酵氨基酸球菌的2-羟基戊二酰辅酶A脱水酶超还原激活剂中全亚铁[4Fe-4S]0簇的光谱学证据。

Spectroscopic evidence for an all-ferrous [4Fe-4S]0 cluster in the superreduced activator of 2-hydroxyglutaryl-CoA dehydratase from Acidaminococcus fermentans.

作者信息

Hans Marcus, Buckel Wolfgang, Bill Eckhard

机构信息

Laboratorium für Mikrobiologie, Fachbereich Biologie, Philipps-Universität, 35032 Marburg, Germany.

出版信息

J Biol Inorg Chem. 2008 May;13(4):563-74. doi: 10.1007/s00775-008-0345-z.

Abstract

The key enzyme of the fermentation of glutamate by Acidaminococcus fermentans, 2-hydroxyglutaryl-coenzyme A dehydratase, catalyzes the reversible syn-elimination of water from (R)-2-hydroxyglutaryl-coenzyme A, resulting in (E)-glutaconylcoenzyme A. The dehydratase system consists of two oxygen-sensitive protein components, the activator (HgdC) and the actual dehydratase (HgdAB). Previous biochemical and spectroscopic studies revealed that the reduced [4Fe-4S]+ cluster containing activator transfers one electron to the dehydratase driven by ATP hydrolysis, which activates the enzyme. With a tenfold excess of titanium(III) citrate at pH 8.0 the activator can be further reduced, yielding about 50% of a superreduced [4Fe-4S]0 cluster in the all-ferrous state. This is inferred from the appearance of a new Mössbauer spectrum with parameters delta = 0.65 mm/s and deltaE(Q) = 1.51-2.19 mm/s at 140 K, which are typical of Fe(II)S4 sites. Parallel-mode electron paramagnetic resonance (EPR) spectroscopy performed at temperatures between 3 and 20 K showed two sharp signals at g = 16 and 12, indicating an integer-spin system. The X-band EPR spectra and magnetic Mössbauer spectra could be consistently simulated by adopting a total spin S(t) = 4 for the all-ferrous cluster with weak zero-field splitting parameters D = -0.66 cm(-1) and E/D = 0.17. The superreduced cluster has apparent spectroscopic similarities with the corresponding [4Fe-4S]0 cluster described for the nitrogenase Fe-protein, but in detail their properties differ. While the all-ferrous Fe-protein is capable of transferring electrons to the MoFe-protein for dinitrogen reduction, a similar physiological role is elusive for the superreduced activator. This finding supports our model that only one-electron transfer steps are involved in dehydratase catalysis. Nevertheless we discuss a common basic mechanism of the two diverse systems, which are so far the only described examples of the all-ferrous [4Fe-4S]0 cluster found in biology.

摘要

发酵氨基酸球菌(Acidaminococcus fermentans)发酵谷氨酸的关键酶,即2-羟基戊二酰辅酶A脱水酶,催化(R)-2-羟基戊二酰辅酶A可逆地顺式消除水,生成(E)-戊二酰辅酶A。该脱水酶系统由两个对氧敏感的蛋白质组分组成,即激活剂(HgdC)和实际的脱水酶(HgdAB)。先前的生化和光谱研究表明,含有还原型[4Fe-4S]+簇的激活剂在ATP水解的驱动下将一个电子转移到脱水酶上,从而激活该酶。在pH 8.0时,加入十倍过量的柠檬酸钛(III)可使激活剂进一步还原,在全亚铁状态下产生约50%的超还原型[4Fe-4S]0簇。这是根据在140 K时出现的新穆斯堡尔谱推断出来的,其参数δ = 0.65 mm/s和δE(Q) = 1.51 - 2.19 mm/s是Fe(II)S4位点的典型参数。在3至20 K之间进行的平行模式电子顺磁共振(EPR)光谱显示在g = 16和12处有两个尖锐信号,表明这是一个整数自旋系统。通过采用全亚铁簇的总自旋S(t) = 4以及较弱的零场分裂参数D = -0.66 cm(-1)和E/D = 0.17,可以一致地模拟X波段EPR光谱和磁性穆斯堡尔光谱。超还原簇与固氮酶铁蛋白中描述的相应[4Fe-4S]0簇在光谱上有明显相似之处,但详细的性质有所不同。虽然全亚铁铁蛋白能够将电子转移到钼铁蛋白上以进行二氮还原,但超还原激活剂的类似生理作用却难以捉摸。这一发现支持了我们的模型,即脱水酶催化仅涉及单电子转移步骤。然而,我们讨论了这两个不同系统的共同基本机制,它们是迄今为止生物学中发现的全亚铁[4Fe-4S]0簇的仅有的例子。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/06c1/2359827/afff1122aa73/775_2008_345_Fig1_HTML.jpg

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