Niiranen Laila, Altermark Bjørn, Brandsdal Bjørn O, Leiros Hanna-Kirsti S, Helland Ronny, Smalås Arne O, Willassen Nils P
Department of Molecular Biotechnology, Institute of Medical Biology, Faculty of Medicine, University of Tromsø, Norway.
Norwegian Structural Biology Centre (NorStruct), Department of Chemistry, Faculty of Science, University of Tromsø, Norway.
FEBS J. 2008 Apr;275(7):1593-1605. doi: 10.1111/j.1742-4658.2008.06317.x. Epub 2008 Feb 27.
Adaptation to extreme environments affects the stability and catalytic efficiency of enzymes, often endowing them with great industrial potential. We compared the environmental adaptation of the secreted endonuclease I from the cold-adapted marine fish pathogen Vibrio salmonicida (VsEndA) and the human pathogen Vibrio cholerae (VcEndA). Kinetic analysis showed that VsEndA displayed unique halotolerance. It retained a considerable amount of activity from low concentrations to at least 0.6 m NaCl, and was adapted to work at higher salt concentrations than VcEndA by maintaining a low K(m) value and increasing k(cat). In differential scanning calorimetry, salt stabilized both enzymes, but the effect on the calorimetric enthalpy and cooperativity of unfolding was larger for VsEndA, indicating salt dependence. Mutation of DNA binding site residues (VsEndA, Q69N and K71N; VcEndA, N69Q and N71K) affected the kinetic parameters. The VsEndA Q69N mutation also increased the T(m) value, whereas other mutations affected mainly DeltaH(cal). The determined crystal structure of VcEndA N69Q revealed the loss of one hydrogen bond present in native VcEndA, but also the formation of a new hydrogen bond involving residue 69 that could possibly explain the similar T(m) values for native and N69Q-mutated VcEndA. Structural analysis suggested that the stability, catalytic efficiency and salt tolerance of EndA were controlled by small changes in the hydrogen bonding networks and surface electrostatic potential. Our results indicate that endonuclease I adaptation is closely coupled to the conditions of the habitats of natural Vibrio, with VsEndA displaying a remarkable salt tolerance unique amongst the endonucleases characterized so far.
对极端环境的适应会影响酶的稳定性和催化效率,常常赋予它们巨大的工业潜力。我们比较了来自适应低温的海洋鱼类病原菌鲑鱼弧菌(VsEndA)和人类病原菌霍乱弧菌(VcEndA)的分泌型核酸内切酶I的环境适应性。动力学分析表明,VsEndA表现出独特的耐盐性。从低浓度到至少0.6 m NaCl,它都保留了相当数量的活性,并且通过保持低K(m)值和增加k(cat),比VcEndA更适应在较高盐浓度下工作。在差示扫描量热法中,盐使两种酶都更稳定,但对VsEndA的热焓和去折叠协同性的影响更大,表明其对盐的依赖性。DNA结合位点残基的突变(VsEndA,Q69N和K71N;VcEndA,N69Q和N71K)影响了动力学参数。VsEndA的Q69N突变也增加了T(m)值,而其他突变主要影响DeltaH(cal)。确定的VcEndA N69Q晶体结构显示,天然VcEndA中存在的一个氢键消失,但也形成了一个涉及残基69的新氢键,这可能解释了天然和N69Q突变的VcEndA具有相似T(m)值的原因。结构分析表明,EndA的稳定性、催化效率和耐盐性受氢键网络和表面静电势的微小变化控制。我们的结果表明,核酸内切酶I的适应性与天然弧菌栖息地的条件密切相关,VsEndA在迄今表征的核酸内切酶中表现出独特的显著耐盐性。