Suppr超能文献

染色质状态图谱:新技术,新见解。

Chromatin state maps: new technologies, new insights.

作者信息

Mendenhall Eric M, Bernstein Bradley E

机构信息

Molecular Pathology Unit and Center for Cancer Research, Massachusetts General Hospital, Charlestown, MA 02129, USA.

出版信息

Curr Opin Genet Dev. 2008 Apr;18(2):109-15. doi: 10.1016/j.gde.2008.01.010. Epub 2008 Mar 12.

Abstract

Recent years have seen unprecedented characterization of mammalian chromatin thanks to advances in chromatin assays, antibody development, and genomics. Genome-wide maps of chromatin state can now be readily acquired using microarrays or next-generation sequencing technologies. These datasets reveal local and long-range chromatin patterns that offer insight into the locations and functions of underlying regulatory elements and genes. These patterns are dynamic across developmental stages and lineages. Global studies of chromatin in embryonic stem cells have led to intriguing hypotheses regarding Polycomb/trithorax and RNA polymerase roles in 'poising' transcription. Chromatin state maps thus provide a rich resource for understanding chromatin at a 'systems level', and a starting point for mechanistic studies aimed at defining epigenetic controls that underlie development.

摘要

近年来,由于染色质分析、抗体研发和基因组学的进展,哺乳动物染色质得到了前所未有的表征。现在可以使用微阵列或下一代测序技术轻松获取全基因组染色质状态图谱。这些数据集揭示了局部和远距离的染色质模式,有助于深入了解潜在调控元件和基因的位置及功能。这些模式在发育阶段和细胞谱系中是动态变化的。对胚胎干细胞中染色质的全局性研究引发了关于多梳蛋白/三胸节蛋白以及RNA聚合酶在“准备”转录过程中作用的有趣假说。因此,染色质状态图谱为从“系统层面”理解染色质提供了丰富资源,也是旨在确定发育背后表观遗传控制机制的研究起点。

相似文献

1
Chromatin state maps: new technologies, new insights.
Curr Opin Genet Dev. 2008 Apr;18(2):109-15. doi: 10.1016/j.gde.2008.01.010. Epub 2008 Mar 12.
3
Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains.
PLoS Genet. 2008 Oct;4(10):e1000242. doi: 10.1371/journal.pgen.1000242. Epub 2008 Oct 31.
4
Mapping the Function of Polycomb Proteins.
Methods Mol Biol. 2016;1480:3-6. doi: 10.1007/978-1-4939-6380-5_1.
5
Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations.
Nature. 2013 Dec 12;504(7479):306-310. doi: 10.1038/nature12716. Epub 2013 Nov 10.
6
Pluripotency factors and Polycomb Group proteins repress aryl hydrocarbon receptor expression in murine embryonic stem cells.
Stem Cell Res. 2014 Jan;12(1):296-308. doi: 10.1016/j.scr.2013.11.007. Epub 2013 Nov 16.
7
High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm.
Dev Cell. 2014 Jul 14;30(1):11-22. doi: 10.1016/j.devcel.2014.05.024. Epub 2014 Jul 3.
10
Polycomb group genes in stem cell self-renewal: a double-edged sword.
Epigenetics. 2011 Jan;6(1):16-9. doi: 10.4161/epi.6.1.13298. Epub 2011 Jan 1.

引用本文的文献

1
Automated chromatin profiling with spa-ChIP seq uncovers the impacts of condition variations.
bioRxiv. 2025 Aug 21:2025.08.14.670415. doi: 10.1101/2025.08.14.670415.
2
A-Z of Epigenetic Readers: Targeting Alternative Splicing and Histone Modification Variants in Cancer.
Cancers (Basel). 2024 Mar 9;16(6):1104. doi: 10.3390/cancers16061104.
3
Epigenetic Dysregulation in the Pathogenesis of Systemic Lupus Erythematosus.
Int J Mol Sci. 2024 Jan 13;25(2):1019. doi: 10.3390/ijms25021019.
4
Noval advance of histone modification in inflammatory skin diseases and related treatment methods.
Front Immunol. 2024 Jan 3;14:1286776. doi: 10.3389/fimmu.2023.1286776. eCollection 2023.
5
: a powerful model organism to explore histone modifications and their upstream regulations.
Epigenetics. 2023 Dec;18(1):2211362. doi: 10.1080/15592294.2023.2211362.
6
Prioritization of genes associated with type 2 diabetes mellitus for functional studies.
Nat Rev Endocrinol. 2023 Aug;19(8):477-486. doi: 10.1038/s41574-023-00836-1. Epub 2023 May 11.
7
Polycomb Directed Cell Fate Decisions in Development and Cancer.
Epigenomes. 2022 Sep 6;6(3):28. doi: 10.3390/epigenomes6030028.
9
Activity-by-contact model of enhancer-promoter regulation from thousands of CRISPR perturbations.
Nat Genet. 2019 Dec;51(12):1664-1669. doi: 10.1038/s41588-019-0538-0. Epub 2019 Nov 29.
10
Multi-dimensional histone methylations for coordinated regulation of gene expression under hypoxia.
Nucleic Acids Res. 2017 Nov 16;45(20):11643-11657. doi: 10.1093/nar/gkx747.

本文引用的文献

1
Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells.
Cell Stem Cell. 2007 Sep 13;1(3):299-312. doi: 10.1016/j.stem.2007.08.003.
4
Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells.
Nat Cell Biol. 2007 Dec;9(12):1428-35. doi: 10.1038/ncb1663. Epub 2007 Nov 25.
5
RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo.
Nat Genet. 2007 Dec;39(12):1512-6. doi: 10.1038/ng.2007.26. Epub 2007 Nov 11.
6
Histone lysine demethylases: emerging roles in development, physiology and disease.
Nat Rev Genet. 2007 Nov;8(11):829-33. doi: 10.1038/nrg2218.
7
Histone deacetylases and cancer.
Oncogene. 2007 Aug 13;26(37):5420-32. doi: 10.1038/sj.onc.1210610.
8
DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA.
Nature. 2007 Aug 9;448(7154):714-7. doi: 10.1038/nature05987.
9
A chromatin landmark and transcription initiation at most promoters in human cells.
Cell. 2007 Jul 13;130(1):77-88. doi: 10.1016/j.cell.2007.05.042.
10
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.
Cell. 2007 Jun 29;129(7):1311-23. doi: 10.1016/j.cell.2007.05.022.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验