Ahmed Shubbir, Shukla Anshuman, Guptasarma Purnananda
Protein Science and Engineering Division, Institute of Microbial Technology, Chandigarh 160036, India.
Biochim Biophys Acta. 2008 Jun;1784(6):916-23. doi: 10.1016/j.bbapap.2008.02.009. Epub 2008 Mar 2.
The structural consequences of the reversal of polypeptide backbone direction (retro modification) remain insufficiently explored. Here, we describe the behavior of an engineered, backbone-reversed form of the 97 residues-long GroES co-chaperonin of Escherichia coli. FTIR and far-UV CD spectroscopy suggest that retro-GroES adopts a mixed polyproline type II (PPII)-beta-strand structure with a beta(II) type CD spectrum similar to that of GroES. Gel-filtration chromatography reveals that the protein adopts trimeric and/or pentameric quaternary structures, with solubility retained up to concentrations of 5.0-5.5 mg/ml in aqueous solutions. Mutations inserting a single tryptophan residue as a spectroscopic probe at three different sites cause no perturbation in the protein's CD spectral characteristics, or in its quaternary structural status. The protein is cooperatively dissociated, and non-cooperatively unfolded, by both guanidine hydrochloride and urea. Intriguingly, unlike with GroES, retro-GroES is not unfolded by heat. Instead, there is a reversible structural transition involving conversion of PPII structure to beta sheet structure, upon heating, with no attendant aggregation even at 90 degrees C. Retro-GroES does not bind GroEL. In summary, some structure-forming characteristics of GroES appear to be conserved through the backbone reversal process, although the differential conformational behavior upon heating also indicates differences.
多肽主链方向反转(逆向修饰)的结构后果仍未得到充分研究。在此,我们描述了一种经过工程改造的、大肠杆菌97个残基长的GroES共伴侣蛋白的主链反转形式的行为。傅里叶变换红外光谱(FTIR)和远紫外圆二色光谱(CD)表明,逆向GroES采用混合的聚脯氨酸II型(PPII)-β-链结构,其β(II)型CD光谱与GroES相似。凝胶过滤色谱显示该蛋白采用三聚体和/或五聚体四级结构,在水溶液中溶解度可达5.0 - 5.5 mg/ml。在三个不同位点插入单个色氨酸残基作为光谱探针的突变不会干扰蛋白质的CD光谱特征或其四级结构状态。该蛋白在盐酸胍和尿素作用下协同解离且非协同展开。有趣的是,与GroES不同,逆向GroES不会因加热而展开。相反,加热时会发生可逆的结构转变,涉及PPII结构向β-折叠结构的转变,即使在90℃也不会伴随聚集。逆向GroES不与GroEL结合。总之,尽管加热时的差异构象行为也表明存在差异,但GroES的一些结构形成特征似乎在主链反转过程中得以保留。