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核酸中鸟嘌呤 - 胞嘧啶碱基对的互变异构形式及其与水分子相互作用的研究。

Studies on tautomeric forms of Guanine-Cytosine base pairs of nucleic acids and their interactions with water molecules.

作者信息

Deepa P, Kolandaivel P

机构信息

Department of Physics, Bharathiar University, Coimbatore-641 046, India.

出版信息

J Biomol Struct Dyn. 2008 Jun;25(6):733-46. doi: 10.1080/07391102.2008.10507217.

Abstract

The relative stabilities of Guanine-Cytosine (G-C) DNA bare base pairs, its tautomeric forms and microhydrated base pairs are theoretically investigated with a focus on the keto-enol tautomerism as well as on the cis-trans isomerism using ab initio and density functional theory methods. The stabilities of the G-C bare base pairs, its tautomeric forms and microhydrated base pairs were affected by various factors including keto-enol tautomerization, cis-trans enol isomerization, and steric hindrance between the base pair and water molecules. The Atoms in Molecules theory (AIM) is employed to investigate H-bonding patterns both in bare and microhydrated base pairs. From the above topological results, an excellent linear correlation is shown between electron density [rho(r)], and its Laplacian [V2rho(r)] at the bond critical points. NBO analysis has been carried out to study the charge transfer between proton acceptor to the antibonding orbital of the X-H bond both in bare and microhydrated base pairs.

摘要

利用从头算和密度泛函理论方法,对鸟嘌呤 - 胞嘧啶(G - C)DNA裸碱基对、其互变异构形式和微水合碱基对的相对稳定性进行了理论研究,重点关注酮 - 烯醇互变异构以及顺 - 反异构化。G - C裸碱基对、其互变异构形式和微水合碱基对的稳定性受到多种因素的影响,包括酮 - 烯醇互变异构、顺 - 反烯醇异构化以及碱基对与水分子之间的空间位阻。采用分子中的原子理论(AIM)研究裸碱基对和微水合碱基对中的氢键模式。从上述拓扑结果可以看出,在键临界点处电子密度[ρ(r)]与其拉普拉斯算子[V2ρ(r)]之间呈现出良好的线性相关性。已进行自然键轨道(NBO)分析,以研究裸碱基对和微水合碱基对中质子受体与X - H键反键轨道之间的电荷转移。

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