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FK506结合蛋白(FKBPs)中序列属性的功能漂移。

Functional drift of sequence attributes in the FK506-binding proteins (FKBPs).

作者信息

Galat Andrzej

机构信息

Institute de Biologie et de Technologies de Saclay, DSV/CEA, CE-Saclay, F-91191 Gif-sur-Yvette Cedex, France.

出版信息

J Chem Inf Model. 2008 May;48(5):1118-30. doi: 10.1021/ci700429n. Epub 2008 Apr 16.

DOI:10.1021/ci700429n
PMID:18412331
Abstract

Diverse members of the FK506-binding proteins (FKBPs) group and their complexes with different macrocyclic ligands of fungal origins such as FK506, rapamycin, ascomycin, and their immunosuppressive and nonimmunosuppressive derivatives display a variety of cellular and biological activities. The functional relatedness of the FKBPs was estimated from the following attributes of their aligned sequences: 1 degrees conservation of the consensus sequence; 2 degrees sequence similarity; 3 degrees pI; 4 degrees hydrophobicity; 5 degrees amino acid hydrophobicity and bulkiness profiles. Analyses of the multiple sequence alignments and intramolecular interaction networks calculated from a series of structures of the FKBPs revealed some variations in the interaction clusters formed by the AA residues that are crucial for sustaining peptidylprolyl cis/trans isomerases (PPIases) activity and binding capacity of the FKBPs. Fine diversification of the sequences of the multiple paralogues and orthologues of the FKBPs encoded in different genomes alter the intramolecular interaction patterns of their structures and allowed them to gain some selectivity in binding to diverse targets (functional drift).

摘要

FK506结合蛋白(FKBPs)家族的不同成员及其与真菌来源的不同大环配体(如FK506、雷帕霉素、子囊霉素)及其免疫抑制和非免疫抑制衍生物形成的复合物表现出多种细胞和生物学活性。FKBPs的功能相关性是根据其比对序列的以下属性估计的:1. 共有序列的保守程度;2. 序列相似性;3. 等电点;4. 疏水性;5. 氨基酸疏水性和体积分布。对一系列FKBPs结构计算得到的多序列比对和分子内相互作用网络的分析表明,对于维持FKBPs的肽基脯氨酰顺/反异构酶(PPIases)活性和结合能力至关重要的氨基酸残基形成的相互作用簇存在一些差异。不同基因组中编码的FKBPs多个旁系同源物和直系同源物序列的精细多样化改变了其结构的分子内相互作用模式,并使其在结合不同靶点时具有一定的选择性(功能漂移)。

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