Weir J T, Schluter D
Department of Ecology and Evolution, University of Chicago, Chicago, IL 60637, USA.
Mol Ecol. 2008 May;17(10):2321-8. doi: 10.1111/j.1365-294X.2008.03742.x. Epub 2008 Apr 16.
Molecular clocks are widely used to date phylogenetic events, yet evidence supporting the rate constancy of molecular clocks through time and across taxonomic lineages is weak. Here, we present 90 candidate avian clock calibrations obtained from fossils and biogeographical events. Cross-validation techniques were used to identify and discard 16 inconsistent calibration points. Molecular evolution occurred in an approximately clock-like manner through time for the remaining 74 calibrations of the mitochondrial gene, cytochrome b. A molecular rate of approximately 2.1% (+/- 0.1%, 95% confidence interval) was maintained over a 12-million-year interval and across most of 12 taxonomic orders. Minor but significant variance in rates occurred across lineages but was not explained by differences in generation time, body size or latitudinal distribution as previously suggested.
分子钟被广泛用于确定系统发育事件的时间,然而,支持分子钟在时间上和跨分类谱系的速率恒定性的证据并不充分。在这里,我们展示了从化石和生物地理事件中获得的90个候选鸟类时钟校准。使用交叉验证技术来识别和剔除16个不一致的校准点。对于线粒体基因细胞色素b的其余74个校准,分子进化在时间上以近似时钟的方式发生。在1200万年的时间间隔内,以及在12个分类目中的大多数目中,分子速率保持在约2.1%(±0.1%,95%置信区间)。各谱系间速率存在微小但显著的差异,但正如之前所提出的,这种差异并不能由世代时间、体型或纬度分布的差异来解释。