使用命令行工具readseq进行序列文件格式转换。

Sequence file format conversion with command-line readseq.

作者信息

Gilbert Don

机构信息

Indiana University, Bloomington, Indiana, USA.

出版信息

Curr Protoc Bioinformatics. 2003 Feb;Appendix 1:Appendix 1E. doi: 10.1002/0471250953.bia01es00.

DOI:10.1002/0471250953.bia01es00

PMID:18428689

Abstract

One of the major challenges in using bioinformatics software is that there are a wide variety of sequence formats, e.g., GenBank, EMBL, and FASTA. It is often the case that a sequence or a set of sequences is in one format but is needed in another. This unit offers a solution to this problem--Readseq. Readseq is a program that can read and write 18 different formats.

摘要

使用生物信息学软件的主要挑战之一是存在各种各样的序列格式，例如GenBank、EMBL和FASTA。通常会出现这样的情况，即一个序列或一组序列是一种格式，但却需要另一种格式。本单元提供了一个解决此问题的方案——Readseq。Readseq是一个可以读取和写入18种不同格式的程序。