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引用本文的文献

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Phylogenetic and chemical diversity of three chemotypes of bloom-forming lyngbya species (Cyanobacteria: Oscillatoriales) from reefs of southeastern Florida.来自佛罗里达州东南部珊瑚礁的形成水华的鞘丝藻属物种(蓝细菌:颤藻目)三种化学型的系统发育和化学多样性
Appl Environ Microbiol. 2009 May;75(9):2879-88. doi: 10.1128/AEM.02656-08. Epub 2009 Mar 6.

本文引用的文献

1
Genetic variance in the composition of two functional groups (diazotrophs and cyanobacteria) from a hypersaline microbial mat.来自高盐度微生物垫的两个功能组(固氮菌和蓝细菌)组成的遗传变异。
Appl Environ Microbiol. 2006 Feb;72(2):1207-17. doi: 10.1128/AEM.72.2.1207-1217.2006.
2
Morphological, chemical, and genetic diversity of tropical marine cyanobacteria Lyngbya spp. and Symploca spp. (Oscillatoriales).热带海洋蓝细菌席藻属(Lyngbya spp.)和束毛藻属(Symploca spp.)(颤藻目)的形态、化学和遗传多样性
Appl Environ Microbiol. 2004 Jun;70(6):3305-12. doi: 10.1128/AEM.70.6.3305-3312.2004.
3
MrBayes 3: Bayesian phylogenetic inference under mixed models.MrBayes 3:混合模型下的贝叶斯系统发育推断。
Bioinformatics. 2003 Aug 12;19(12):1572-4. doi: 10.1093/bioinformatics/btg180.
4
MRBAYES: Bayesian inference of phylogenetic trees.MRBAYES:系统发育树的贝叶斯推断
Bioinformatics. 2001 Aug;17(8):754-5. doi: 10.1093/bioinformatics/17.8.754.
5
PCR primers to amplify 16S rRNA genes from cyanobacteria.用于从蓝细菌中扩增16S rRNA基因的PCR引物。
Appl Environ Microbiol. 1997 Aug;63(8):3327-32. doi: 10.1128/aem.63.8.3327-3332.1997.
6
Evidence for paralytic shellfish poisons in the freshwater cyanobacterium Lyngbya wollei (Farlow ex Gomont) comb. nov.淡水蓝藻沃氏席藻(Lyngbya wollei (Farlow ex Gomont) comb. nov.)中麻痹性贝类毒素的证据
Appl Environ Microbiol. 1997 Aug;63(8):3104-10. doi: 10.1128/aem.63.8.3104-3110.1997.
7
Phylogeny of cyanobacterial nifH genes: evolutionary implications and potential applications to natural assemblages.蓝藻固氮酶铁蛋白基因的系统发育:进化意义及在自然群落中的潜在应用
Microbiology (Reading). 1997 Apr;143 ( Pt 4):1443-1450. doi: 10.1099/00221287-143-4-1443.

形态学和遗传学证据表明,蓝藻惠氏鞘丝藻(学名:Lyngbya wollei (Farlow ex Gomont) Speziale and Dyck)至少包含两个物种。

Morphological and genetic evidence that the cyanobacterium Lyngbya wollei (Farlow ex Gomont) Speziale and Dyck encompasses at least two species.

作者信息

Joyner Jennifer J, Litaker R Wayne, Paerl Hans W

机构信息

Institute of Marine Sciences, University of North Carolina at Chapel Hill, 3431 Arendell Street, Morehead City, NC 28557, USA.

出版信息

Appl Environ Microbiol. 2008 Jun;74(12):3710-7. doi: 10.1128/AEM.02645-07. Epub 2008 Apr 25.

DOI:10.1128/AEM.02645-07
PMID:18441114
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2446555/
Abstract

Dense blooms of the cyanobacterium Lyngbya wollei are increasingly responsible for declining water quality and habitat degradation in numerous springs, rivers, and reservoirs. This research represents the first molecular phylogenetic analysis of L. wollei in comparison with the traditional morphological characterization of this species. Specimens were collected from several springs in Florida and a reservoir in North Carolina. Segments of the small-subunit (SSU) rRNA and nifH genes were PCR amplified, cloned, and sequenced. The phylogenetic analysis of the SSU rRNA gene revealed sequences that fell into three distinct subclusters, each with >97% sequence similarity. These were designated operational taxonomic unit 1 (OTU1), OTU2, and OTU3. Similarly, the nifH sequences fell into three distinct subclusters named S1, S2, and S3. When either bulk samples or individual filaments were analyzed, we recovered OTU1 with S1, OTU2 with S2, and OTU3 with S3. The coherence between the three SSU rRNA gene and nifH subclusters was consistent with genetically distinct strains or species. Cells associated with subclusters OTU3 and S3 were significantly wider and longer than those associated with other subclusters. The combined molecular and morphological data indicate that the species commonly identified as L. wollei in the literature represents two or possibly more species. Springs containing OTU3 and S3 demonstrated lower ion concentrations than other collection sites. Geographical locations of Lyngbya subclusters did not correlate with residual dissolved inorganic nitrogen or phosphorus concentrations. This study emphasizes the need to complement traditional identification with molecular characterization to more definitively detect and characterize harmful cyanobacterial species or strains.

摘要

蓝藻惠氏鞘丝藻的密集繁殖日益导致众多泉水、河流和水库的水质下降和栖息地退化。本研究首次对惠氏鞘丝藻进行了分子系统发育分析,并与该物种的传统形态特征进行了比较。样本采集自佛罗里达州的几个泉水和北卡罗来纳州的一个水库。对小亚基(SSU)rRNA和nifH基因片段进行PCR扩增、克隆和测序。SSU rRNA基因的系统发育分析显示,序列分为三个不同的亚群,每个亚群的序列相似性>97%。这些被指定为操作分类单元1(OTU1)、OTU2和OTU3。同样,nifH序列分为三个不同的亚群,分别命名为S1、S2和S3。当分析大量样本或单个丝状体时,我们发现OTU1与S1、OTU2与S2、OTU3与S3相对应。三个SSU rRNA基因和nifH亚群之间的一致性与遗传上不同的菌株或物种一致。与OTU3和S3亚群相关的细胞明显比与其他亚群相关的细胞更宽更长。综合分子和形态学数据表明,文献中通常鉴定为惠氏鞘丝藻的物种代表两个或可能更多的物种。含有OTU3和S3的泉水显示出比其他采集地点更低的离子浓度。鞘丝藻亚群的地理位置与残留溶解无机氮或磷浓度无关。本研究强调需要用分子特征补充传统鉴定,以更明确地检测和鉴定有害蓝藻物种或菌株。