Suppr超能文献

结核分枝杆菌H37Rv的Rv2780的过表达、纯化、结晶及初步X射线分析

Overexpression, purification, crystallization and preliminary X-ray analysis of Rv2780 from Mycobacterium tuberculosis H37Rv.

作者信息

Tripathi Sarvind Mani, Ramachandran Ravishankar

机构信息

Molecular and Structural Biology Division, Central Drug Research Institute, PO Box 173, Chattar Manzil, Mahatma Gandhi Marg, Lucknow 226001, India.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 May 1;64(Pt 5):367-70. doi: 10.1107/S1744309108007653. Epub 2008 Apr 5.

Abstract

Rv2780, an alanine dehydrogenase from Mycobacterium tuberculosis (MtAlaDH), catalyzes the NAD-dependent interconversion of alanine and pyruvate. Alanine dehydrogenase is released into the culture medium in substantial amounts by virulent strains of mycobacteria and is not found in the vaccine strain of tuberculosis. Crystals of recombinant MtAlaDH were grown from 2 M ammonium sulfate solution at approximately 12 mg ml(-1) protein concentration in two crystal forms which occur in the presence and absence of NAD/pyruvate, respectively. Diffraction data extending to 2.6 A were collected at room temperature from both apo and ternary complex crystals. Crystals of the apoenzyme have unit-cell parameters a = 173.89, b = 127.07, c = 135.95 A. They are rod-like in shape and belong to space group C2. They contain a hexamer in the asymmetric unit. Crystals of the ternary complex belong to space group P4(3)2(1)2 and have unit-cell parameters a = b = 88.99, c = 373.85 A. There are three subunits in the asymmetric unit of the holoenzyme crystals.

摘要

Rv2780是一种来自结核分枝杆菌的丙氨酸脱氢酶(MtAlaDH),催化丙氨酸和丙酮酸之间依赖于NAD的相互转化。丙氨酸脱氢酶由结核分枝杆菌的强毒株大量释放到培养基中,而在结核疫苗株中未发现。重组MtAlaDH晶体是在2 M硫酸铵溶液中,蛋白质浓度约为12 mg/ml时生长的,有两种晶体形式,分别在不存在和存在NAD/丙酮酸的情况下出现。在室温下从无辅基和三元复合物晶体中收集了延伸至2.6 Å的衍射数据。无辅基酶晶体的晶胞参数为a = 173.89、b = 127.07、c = 135.95 Å。它们呈棒状,属于空间群C2。其不对称单位中含有一个六聚体。三元复合物晶体属于空间群P4(3)2(1)2,晶胞参数为a = b = 88.99、c = 373.85 Å。全酶晶体的不对称单位中有三个亚基。

相似文献

1
Overexpression, purification, crystallization and preliminary X-ray analysis of Rv2780 from Mycobacterium tuberculosis H37Rv.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 May 1;64(Pt 5):367-70. doi: 10.1107/S1744309108007653. Epub 2008 Apr 5.
2
Crystallization and preliminary X-ray analysis of an alanine dehydrogenase from Bacillus megaterium WSH-002.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Aug;69(Pt 8):934-6. doi: 10.1107/S1744309113019672. Epub 2013 Jul 27.
3
Overexpression, purification and crystallization of lysine epsilon-aminotransferase (Rv3290c) from Mycobacterium tuberculosis H37Rv.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Jun 1;62(Pt 6):572-5. doi: 10.1107/S1744309106016824. Epub 2006 May 31.
4
Overproduction, purification and preliminary X-ray diffraction analysis of a sulfotransferase from Mycobacterium tuberculosis H37Rv.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Jan 1;61(Pt 1):33-5. doi: 10.1107/S1744309104022328. Epub 2004 Sep 25.
6
Expression, purification, crystallization and preliminary X-ray crystallographic analysis of pantothenate kinase from Mycobacterium tuberculosis.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Jan 1;61(Pt 1):65-7. doi: 10.1107/S1744309104028040. Epub 2004 Nov 9.
7
Crystallization and preliminary X-ray crystallographic studies of the N-terminal domain of FadD28, a fatty-acyl AMP ligase from Mycobacterium tuberculosis.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Apr 1;62(Pt 4):350-2. doi: 10.1107/S1744309106005938. Epub 2006 Mar 10.
9
Crystallization and preliminary X-ray analysis of NAD kinase from Mycobacterium tuberculosis H37Rv.
Acta Crystallogr D Biol Crystallogr. 2001 Sep;57(Pt 9):1319-20. doi: 10.1107/s0907444901011362. Epub 2001 Aug 23.
10
Cloning, overexpression, purification, crystallization and preliminary X-ray diffraction analysis of Rv0241c (HtdX) from Mycobacterium tuberculosis H37Rv.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Oct;69(Pt 10):1110-3. doi: 10.1107/S1744309113023452. Epub 2013 Sep 28.

引用本文的文献

1
Mycobacterium tuberculosis suppresses host antimicrobial peptides by dehydrogenating L-alanine.
Nat Commun. 2024 May 17;15(1):4216. doi: 10.1038/s41467-024-48588-4.
2
Alanine dehydrogenases in mycobacteria.
J Microbiol. 2019 Feb;57(2):81-92. doi: 10.1007/s12275-019-8543-7. Epub 2019 Jan 31.
3
Salicylanilide diethyl phosphates as potential inhibitors of some mycobacterial enzymes.
ScientificWorldJournal. 2014;2014:703053. doi: 10.1155/2014/703053. Epub 2014 Nov 4.

本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
3
Prioritizing genomic drug targets in pathogens: application to Mycobacterium tuberculosis.
PLoS Comput Biol. 2006 Jun 9;2(6):e61. doi: 10.1371/journal.pcbi.0020061.
5
Screening and optimization strategies for macromolecular crystal growth.
Acta Crystallogr D Biol Crystallogr. 1994 Jul 1;50(Pt 4):414-23. doi: 10.1107/S0907444994002660.
6
Tuberculosis: a problem with persistence.
Nat Rev Microbiol. 2003 Nov;1(2):97-105. doi: 10.1038/nrmicro749.
7
Enhancing protein crystallization through precipitant synergy.
Structure. 2003 Sep;11(9):1061-70. doi: 10.1016/s0969-2126(03)00185-0.
10
Complex pattern of Mycobacterium marinum gene expression during long-term granulomatous infection.
Proc Natl Acad Sci U S A. 2002 Mar 19;99(6):3920-5. doi: 10.1073/pnas.002024599. Epub 2002 Mar 12.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验