Suppr超能文献

结核分枝杆菌泛酸激酶的表达、纯化、结晶及初步X射线晶体学分析

Expression, purification, crystallization and preliminary X-ray crystallographic analysis of pantothenate kinase from Mycobacterium tuberculosis.

作者信息

Das Satyabrata, Kumar Parimal, Bhor Vikrant, Surolia A, Vijayan M

机构信息

Molecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Jan 1;61(Pt 1):65-7. doi: 10.1107/S1744309104028040. Epub 2004 Nov 9.

Abstract

Pantothenate kinase is an essential enzyme in the bacterial life cycle. It catalyzes the phosphorylation of pantothenate (vitamin B5) to 4'-phosphopantothenate, the first step in the coenzyme A biosynthetic pathway. The enzyme from Mycobacterium tuberculosis, MW 35.7 kDa, has been cloned, expressed, purified and crystallized in two different trigonal crystal forms, both belonging to space group P3(1)21. Two complete data sets of resolution 2.5 A (form I) and 2.9 A (form II) from crystals with unit-cell parameters a = b = 78.3, c = 115.45 A and a = b = 107.63, c = 89.85 A, respectively, were collected at room temperature on a home X-ray source. Structures of both crystal forms were solved for one subunit in the asymmetric unit by molecular replacement.

摘要

泛酸激酶是细菌生命周期中的一种必需酶。它催化泛酸(维生素B5)磷酸化生成4'-磷酸泛酸,这是辅酶A生物合成途径的第一步。来自结核分枝杆菌的该酶分子量为35.7 kDa,已被克隆、表达、纯化,并以两种不同的三角晶体形式结晶,二者均属于空间群P3(1)21。分别从晶胞参数为a = b = 78.3、c = 115.45 Å(晶型I)和a = b = 107.63、c = 89.85 Å(晶型II)的晶体中,在室温下于家用X射线源上收集了分辨率为2.5 Å(晶型I)和2.9 Å(晶型II)的两个完整数据集。通过分子置换法解析了不对称单元中一个亚基的两种晶体形式的结构。

相似文献

1
Expression, purification, crystallization and preliminary X-ray crystallographic analysis of pantothenate kinase from Mycobacterium tuberculosis.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Jan 1;61(Pt 1):65-7. doi: 10.1107/S1744309104028040. Epub 2004 Nov 9.
2
Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of DapA (Rv2753c) from Mycobacterium tuberculosis.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Nov 1;62(Pt 11):1116-9. doi: 10.1107/S1744309106039844. Epub 2006 Oct 20.
3
Cloning, purification, crystallization and preliminary crystallographic analysis of a ribokinase from Staphylococcus aureus.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Jun 1;65(Pt 6):574-6. doi: 10.1107/S1744309109014833. Epub 2009 May 22.
4
Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of DapC (Rv0858c) from Mycobacterium tuberculosis.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Aug 1;62(Pt 8):794-7. doi: 10.1107/S1744309106026753. Epub 2006 Jul 25.
5
Crystallization and preliminary X-ray diffraction analysis of shikimate kinase from Mycobacterium tuberculosis in complex with MgADP.
Acta Crystallogr D Biol Crystallogr. 2001 Dec;57(Pt 12):1870-1. doi: 10.1107/s0907444901014032. Epub 2001 Nov 21.
6
Structural and biochemical characterization of compounds inhibiting Mycobacterium tuberculosis pantothenate kinase.
J Biol Chem. 2013 Jun 21;288(25):18260-70. doi: 10.1074/jbc.M113.476473. Epub 2013 May 9.
7
Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of Rv2827c from Mycobacterium tuberculosis.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Aug 1;62(Pt 8):753-6. doi: 10.1107/S1744309106024213. Epub 2006 Jul 24.
8
Invariance and variability in bacterial PanK: a study based on the crystal structure of Mycobacterium tuberculosis PanK.
Acta Crystallogr D Biol Crystallogr. 2006 Jun;62(Pt 6):628-38. doi: 10.1107/S0907444906012728. Epub 2006 May 12.
9
Cloning, expression, purification, crystallization and preliminary X-ray crystallographic analysis of isocitrate dehydrogenase 2 (Rv0066c) from Mycobacterium tuberculosis.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Dec 1;64(Pt 12):1139-42. doi: 10.1107/S1744309108035343. Epub 2008 Nov 28.
10
Crystallization and preliminary X-ray analysis of NAD kinase from Mycobacterium tuberculosis H37Rv.
Acta Crystallogr D Biol Crystallogr. 2001 Sep;57(Pt 9):1319-20. doi: 10.1107/s0907444901011362. Epub 2001 Aug 23.

引用本文的文献

1
Vitamin in the Crosshairs: Targeting Pantothenate and Coenzyme A Biosynthesis for New Antituberculosis Agents.
Front Cell Infect Microbiol. 2020 Dec 15;10:605662. doi: 10.3389/fcimb.2020.605662. eCollection 2020.
2
Biochemical and structural studies of mutants indicate concerted movement of the dimer interface and ligand-binding region of Mycobacterium tuberculosis pantothenate kinase.
Acta Crystallogr F Struct Biol Commun. 2017 Nov 1;73(Pt 11):635-643. doi: 10.1107/S2053230X17015667. Epub 2017 Oct 30.
3
Substrate recognition by β-ketoacyl-ACP synthases.
Biochemistry. 2011 Dec 13;50(49):10678-86. doi: 10.1021/bi201199x. Epub 2011 Nov 17.

本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
3
Evolution and classification of P-loop kinases and related proteins.
J Mol Biol. 2003 Oct 31;333(4):781-815. doi: 10.1016/j.jmb.2003.08.040.
4
The TB structural genomics consortium: a resource for Mycobacterium tuberculosis biology.
Tuberculosis (Edinb). 2003;83(4):223-49. doi: 10.1016/s1472-9792(03)00051-9.
6
Crystal structures of Mycobacterium smegmatis RecA and its nucleotide complexes.
J Bacteriol. 2003 Jul;185(14):4280-4. doi: 10.1128/JB.185.14.4280-4284.2003.
7
Role of feedback regulation of pantothenate kinase (CoaA) in control of coenzyme A levels in Escherichia coli.
J Bacteriol. 2003 Jun;185(11):3410-5. doi: 10.1128/JB.185.11.3410-3415.2003.
8
The TB structural genomics consortium: providing a structural foundation for drug discovery.
Curr Drug Targets Infect Disord. 2002 Jun;2(2):121-41. doi: 10.2174/1568005023342551.
10
The biosynthesis of coenzyme A in bacteria.
Vitam Horm. 2001;61:157-71. doi: 10.1016/s0083-6729(01)61005-7.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验