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振荡基因回路模型中的随机相干性。

Stochastic coherence in an oscillatory gene circuit model.

作者信息

Hilborn Robert C, Erwin Jessie D

机构信息

Department of Physics and Astronomy, University of Nebraska-Lincoln, Lincoln, NE 68588-0111, USA.

出版信息

J Theor Biol. 2008 Jul 21;253(2):349-54. doi: 10.1016/j.jtbi.2008.03.012. Epub 2008 Mar 14.

Abstract

We show that noise-induced oscillations in a gene circuit model display stochastic coherence, that is, a maximum in the regularity of the oscillations as a function of noise amplitude. The effect is manifest as a system-size effect in a purely stochastic molecular reaction description of the circuit dynamics. We compare the molecular reaction model behavior with that predicted by a rate equation version of the same system. In addition, we show that commonly used reduced models that ignore fast operator reactions do not capture the full stochastic behavior of the gene circuit. Stochastic coherence occurs under conditions that may be physiologically relevant.

摘要

我们表明,基因回路模型中的噪声诱导振荡表现出随机相干性,即振荡的规律性作为噪声幅度的函数达到最大值。在对回路动力学的纯随机分子反应描述中,这种效应表现为系统大小效应。我们将分子反应模型的行为与同一系统的速率方程版本所预测的行为进行比较。此外,我们表明,忽略快速算子反应的常用简化模型无法捕捉基因回路的完整随机行为。随机相干性在可能与生理相关的条件下出现。

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