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基于支持向量机的抗氧化酚类化合物键解离焓预测

Prediction of bond dissociation enthalpy of antioxidant phenols by support vector machine.

作者信息

Nantasenamat Chanin, Isarankura-Na-Ayudhya Chartchalerm, Naenna Thanakorn, Prachayasittikul Virapong

机构信息

Department of Clinical Microbiology, Faculty of Medical Technology, Mahidol University, Bangkok 10700, Thailand.

出版信息

J Mol Graph Model. 2008 Sep;27(2):188-96. doi: 10.1016/j.jmgm.2008.04.005. Epub 2008 Apr 14.

Abstract

Antioxidants play crucial roles in scavenging oxidative damages arising from reactive oxygen species. Bond dissociation enthalpy (BDE) of phenolic O-H bond has well been accepted as an indicator of antioxidant activity since phenols donate the hydrogen atom to the free radicals thereby neutralizing its toxic effect. The BDEs from a data set of 39 antioxidant phenols were modeled using computationally inexpensive quantum chemical descriptors with multiple linear regression (MLR), partial least squares (PLS), and support vector machine (SVM). The molecular descriptors of the phenols were derived from calculations at the following theoretical levels: AM1, HF/3-21g(d), B3LYP/3-21g(d), and B3LYP/6-31g(d). Results indicated that when MLR and PLS were used as the regression methods, B3LYP/3-21g(d) gave the best performance with leave-one-out cross-validated correlation coefficients (r) of 0.917 and 0.921, respectively, while the semiempirical AM1 provided slightly lower r of 0.897 and 0.888, respectively. When SVM was used as the regression method no significant difference in the accuracy was observed for models using B3LYP/3-21g(d) and AM1 as indicated by r of 0.968 and 0.966, respectively. The quantitative structure-property relationship (QSPR) model of BDE discussed in this study offers great potential for the design of novel antioxidant phenols with robust properties.

摘要

抗氧化剂在清除活性氧产生的氧化损伤方面发挥着关键作用。酚类O-H键的键解离焓(BDE)已被广泛接受为抗氧化活性的指标,因为酚类将氢原子提供给自由基,从而中和其毒性作用。使用计算成本较低的量子化学描述符,通过多元线性回归(MLR)、偏最小二乘法(PLS)和支持向量机(SVM)对39种抗氧化酚数据集的BDE进行建模。酚类的分子描述符来自以下理论水平的计算:AM1、HF/3-21g(d)、B3LYP/3-21g(d)和B3LYP/6-31g(d)。结果表明,当使用MLR和PLS作为回归方法时,B3LYP/3-21g(d)表现最佳,留一法交叉验证相关系数(r)分别为0.917和0.921,而半经验AM1的r略低,分别为0.897和0.888。当使用SVM作为回归方法时,使用B3LYP/3-21g(d)和AM1的模型在准确性上没有显著差异,r分别为0.968和0.966。本研究中讨论的BDE的定量结构-性质关系(QSPR)模型为设计具有强大性能的新型抗氧化酚提供了巨大潜力。

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