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A segment of a plasmid gene required for conjugal transfer encodes a site-specific, single-strand DNA endonuclease and ligase.

作者信息

Bhattacharjee M K, Meyer R J

机构信息

Department of Microbiology, University of Texas, Austin 78712.

出版信息

Nucleic Acids Res. 1991 Mar 11;19(5):1129-37. doi: 10.1093/nar/19.5.1129.

DOI:10.1093/nar/19.5.1129
PMID:1850512
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC333791/
Abstract

The polypeptide encoded by a segment of a gene required for the conjugal mobilization of the broad host-range plasmid R1162 has been purified as a beta-galactosidase fusion protein. The hybrid protein binds specifically to a small, double-stranded DNA fragment containing the origin of transfer (oriT), and specifically cleaves oriT single-stranded DNA at the position cleaved during transfer. Only one of the two DNA strands is a substrate. A fraction of the digested DNA is resistant to lambda exonuclease digestion, indicating that some molecules have protein covalently attached at the 5' end. After prolonged incubation with fusion protein, some of the cleaved molecules are religated. In vivo, M13 phage DNA containing two, directly-repeated copies of oriT recombine in cells containing the fusion protein. The single-stranded viral DNA forms are the probable substrates for the protein, the cleaved DNA being subsequently religated to form recombinant molecules. Cleavage of the DNA might be the reverse reaction of the ligation that normally takes place after conjugative transfer of a single, linear plasmid DNA strand.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/333791/6e355259b689/nar00241-0156-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/333791/d9c8679b1e91/nar00241-0152-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/333791/d6ff6410b295/nar00241-0152-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/333791/6d362104e559/nar00241-0153-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/333791/f8cd0adb5539/nar00241-0154-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/333791/610b26dc8a1c/nar00241-0155-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/333791/6e355259b689/nar00241-0156-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/333791/d9c8679b1e91/nar00241-0152-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/333791/d6ff6410b295/nar00241-0152-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/333791/6d362104e559/nar00241-0153-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/333791/f8cd0adb5539/nar00241-0154-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/333791/610b26dc8a1c/nar00241-0155-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/831f/333791/6e355259b689/nar00241-0156-a.jpg

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A segment of a plasmid gene required for conjugal transfer encodes a site-specific, single-strand DNA endonuclease and ligase.
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2
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5
Conjugative transfer of promiscuous IncP plasmids: interaction of plasmid-encoded products with the transfer origin.接合型IncP质粒的接合转移:质粒编码产物与转移起始位点的相互作用
Proc Natl Acad Sci U S A. 1989 Mar;86(6):1771-5. doi: 10.1073/pnas.86.6.1771.
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Plasmid R6K contains two functional oriTs which can assemble simultaneously in relaxosomes in vivo.质粒R6K包含两个功能性转移起始位点,它们可以在体内松弛体中同时组装。
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Site-specific recombination at oriT of plasmid R1162 in the absence of conjugative transfer.在不存在接合转移的情况下,质粒R1162 oriT处的位点特异性重组。
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NikAB- or NikB-dependent intracellular recombination between tandemly repeated oriT sequences of plasmid R64 in plasmid or single-stranded phage vectors.质粒或单链噬菌体载体中质粒R64串联重复oriT序列之间的NikAB或NikB依赖性细胞内重组。
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Roles of TraI protein with activities of cleaving and rejoining the single-stranded DNA in both initiation and termination of conjugal DNA transfer.TraI蛋白在接合性DNA转移的起始和终止过程中具有切割和重新连接单链DNA的活性,其作用如下。
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Origin and fate of the 3' ends of single-stranded DNA generated by conjugal transfer of plasmid R1162.由质粒 R1162 接合转移产生的单链 DNA 3'末端的起源和命运。
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本文引用的文献

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Analysis of gene control signals by DNA fusion and cloning in Escherichia coli.通过在大肠杆菌中进行DNA融合和克隆分析基因控制信号。
J Mol Biol. 1980 Apr;138(2):179-207. doi: 10.1016/0022-2836(80)90283-1.
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Construction of improved M13 vectors using oligodeoxynucleotide-directed mutagenesis.利用寡脱氧核苷酸定向诱变构建改良的M13载体。
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A system for shotgun DNA sequencing.一种用于鸟枪法DNA测序的系统。
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绘制广宿主范围质粒R1162(RSF1010)编码的引发酶上的IV型分泌信号图谱。
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Agrobacterium tumefaciens-mediated transformation of plants by the pTF-FC2 plasmid is efficient and strictly dependent on the MobA protein.根癌农杆菌介导的pTF-FC2质粒对植物的转化效率高,且严格依赖于MobA蛋白。
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NikAB- or NikB-dependent intracellular recombination between tandemly repeated oriT sequences of plasmid R64 in plasmid or single-stranded phage vectors.质粒或单链噬菌体载体中质粒R64串联重复oriT序列之间的NikAB或NikB依赖性细胞内重组。
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Relaxed specificity of the R1162 nickase: a model for evolution of a system for conjugative mobilization of plasmids.R1162切口酶的宽松特异性:质粒接合转移系统进化的模型
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Identification of the mob genes of plasmid pSC101 and characterization of a hybrid pSC101-R1162 system for conjugal mobilization.质粒pSC101的mob基因鉴定及用于接合转移的杂交pSC101-R1162系统的特性分析。
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10
The MobA-linked primase is the only replication protein of R1162 required for conjugal mobilization.与MobA相关的引发酶是R1162接合转移所需的唯一复制蛋白。
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Sequencing end-labeled DNA with base-specific chemical cleavages.通过碱基特异性化学切割对末端标记的DNA进行测序。
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Processing of plasmid DNA during bacterial conjugation.细菌接合过程中质粒DNA的加工
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In vitro gene fusions that join an enzymatically active beta-galactosidase segment to amino-terminal fragments of exogenous proteins: Escherichia coli plasmid vectors for the detection and cloning of translational initiation signals.将具有酶活性的β-半乳糖苷酶片段与外源蛋白质的氨基末端片段连接的体外基因融合:用于检测和克隆翻译起始信号的大肠杆菌质粒载体。
J Bacteriol. 1980 Aug;143(2):971-80. doi: 10.1128/jb.143.2.971-980.1980.
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An exonuclease induced by bacteriophage lambda. II. Nature of the enzymatic reaction.一种由噬菌体λ诱导产生的核酸外切酶。II. 酶促反应的性质。
J Biol Chem. 1967 Feb 25;242(4):679-86.
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Cleavage of structural proteins during the assembly of the head of bacteriophage T4.在噬菌体T4头部组装过程中结构蛋白的切割
Nature. 1970 Aug 15;227(5259):680-5. doi: 10.1038/227680a0.
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Identification of individual sex-factor DNA strands and their replication during conjugation in thermosensitive DNA mutants of Escherichia coli.在大肠杆菌温度敏感型DNA突变体中,鉴定个体性因子DNA链及其在接合过程中的复制情况。
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Strand-specific transfer of donor DNA during conjugation in E. coli.大肠杆菌接合过程中供体DNA的链特异性转移。
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