Merritt Ethan A, Holmes Margaret, Buckner Frederick S, Van Voorhis Wesley C, Quartly Erin, Phizicky Eric M, Lauricella Angela, Luft Joseph, DeTitta George, Neely Helen, Zucker Frank, Hol Wim G J
Structural Genomics of Pathogenic Protozoa (SGPP) Consortium, USA.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Jun 1;64(Pt 6):474-8. doi: 10.1107/S174430910801141X. Epub 2008 May 16.
The structure of a structural genomics target protein, Tbru020260AAA from Trypanosoma brucei, has been determined to a resolution of 2.2 A using multiple-wavelength anomalous diffraction at the Se K edge. This protein belongs to Pfam sequence family PF08538 and is only distantly related to previously studied members of the alpha/beta-hydrolase fold family. Structural superposition onto representative alpha/beta-hydrolase fold proteins of known function indicates that a possible catalytic nucleophile, Ser116 in the T. brucei protein, lies at the expected location. However, the present structure and by extension the other trypanosomatid members of this sequence family have neither sequence nor structural similarity at the location of other active-site residues typical for proteins with this fold. Together with the presence of an additional domain between strands beta6 and beta7 that is conserved in trypanosomatid genomes, this suggests that the function of these homologs has diverged from other members of the fold family.
利用在硒K边的多波长反常衍射,已确定来自布氏锥虫的结构基因组学目标蛋白Tbru020260AAA的结构,分辨率达到2.2埃。该蛋白属于Pfam序列家族PF08538,与先前研究的α/β-水解酶折叠家族成员仅有远缘关系。与已知功能的代表性α/β-水解酶折叠蛋白进行结构叠加表明,布氏锥虫蛋白中的Ser116可能是催化亲核试剂,位于预期位置。然而,目前的结构以及该序列家族的其他锥虫成员在具有这种折叠的蛋白质典型的其他活性位点残基位置既没有序列相似性也没有结构相似性。再加上在β6和β7链之间存在一个在锥虫基因组中保守的额外结构域,这表明这些同源物的功能已与该折叠家族的其他成员有所不同。