Suppr超能文献

功能未知的布氏锥虫α/β-水解酶折叠蛋白的结构

Structure of a Trypanosoma brucei alpha/beta-hydrolase fold protein with unknown function.

作者信息

Merritt Ethan A, Holmes Margaret, Buckner Frederick S, Van Voorhis Wesley C, Quartly Erin, Phizicky Eric M, Lauricella Angela, Luft Joseph, DeTitta George, Neely Helen, Zucker Frank, Hol Wim G J

机构信息

Structural Genomics of Pathogenic Protozoa (SGPP) Consortium, USA.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Jun 1;64(Pt 6):474-8. doi: 10.1107/S174430910801141X. Epub 2008 May 16.

Abstract

The structure of a structural genomics target protein, Tbru020260AAA from Trypanosoma brucei, has been determined to a resolution of 2.2 A using multiple-wavelength anomalous diffraction at the Se K edge. This protein belongs to Pfam sequence family PF08538 and is only distantly related to previously studied members of the alpha/beta-hydrolase fold family. Structural superposition onto representative alpha/beta-hydrolase fold proteins of known function indicates that a possible catalytic nucleophile, Ser116 in the T. brucei protein, lies at the expected location. However, the present structure and by extension the other trypanosomatid members of this sequence family have neither sequence nor structural similarity at the location of other active-site residues typical for proteins with this fold. Together with the presence of an additional domain between strands beta6 and beta7 that is conserved in trypanosomatid genomes, this suggests that the function of these homologs has diverged from other members of the fold family.

摘要

利用在硒K边的多波长反常衍射,已确定来自布氏锥虫的结构基因组学目标蛋白Tbru020260AAA的结构,分辨率达到2.2埃。该蛋白属于Pfam序列家族PF08538,与先前研究的α/β-水解酶折叠家族成员仅有远缘关系。与已知功能的代表性α/β-水解酶折叠蛋白进行结构叠加表明,布氏锥虫蛋白中的Ser116可能是催化亲核试剂,位于预期位置。然而,目前的结构以及该序列家族的其他锥虫成员在具有这种折叠的蛋白质典型的其他活性位点残基位置既没有序列相似性也没有结构相似性。再加上在β6和β7链之间存在一个在锥虫基因组中保守的额外结构域,这表明这些同源物的功能已与该折叠家族的其他成员有所不同。

相似文献

1
Structure of a Trypanosoma brucei alpha/beta-hydrolase fold protein with unknown function.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Jun 1;64(Pt 6):474-8. doi: 10.1107/S174430910801141X. Epub 2008 May 16.
3
Structure of the minimized alpha/beta-hydrolase fold protein from Thermus thermophilus HB8.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Dec 1;63(Pt 12):993-7. doi: 10.1107/S1744309107061106. Epub 2007 Nov 30.
4
Crystal structure of a Trypanosoma brucei metacaspase.
Proc Natl Acad Sci U S A. 2012 May 8;109(19):7469-74. doi: 10.1073/pnas.1200885109. Epub 2012 Apr 23.
5
Crystal structure of a putative CN hydrolase from yeast.
Proteins. 2003 Aug 1;52(2):283-91. doi: 10.1002/prot.10417.
6
7
Three dimensional structure and implications for the catalytic mechanism of 6-phosphogluconolactonase from Trypanosoma brucei.
J Mol Biol. 2007 Feb 23;366(3):868-81. doi: 10.1016/j.jmb.2006.11.063. Epub 2006 Nov 22.
8
Structural analysis of adenylate cyclases from Trypanosoma brucei in their monomeric state.
EMBO J. 2001 Feb 1;20(3):433-45. doi: 10.1093/emboj/20.3.433.
9
Crystal structure of TbEsa1 presumed Tudor domain from Trypanosoma brucei.
J Struct Biol. 2020 Jan 1;209(1):107406. doi: 10.1016/j.jsb.2019.107406. Epub 2019 Nov 17.
10
Solution structure of Q388A3 PDZ domain from Trypanosoma brucei.
J Struct Biol. 2016 May;194(2):214-7. doi: 10.1016/j.jsb.2016.02.018. Epub 2016 Feb 22.

引用本文的文献

2
Lessons from high-throughput protein crystallization screening: 10 years of practical experience.
Expert Opin Drug Discov. 2011 May;6(5):465-80. doi: 10.1517/17460441.2011.566857. Epub 2011 Mar 22.
3
A toolkit for publishing enhanced figures.
J Appl Crystallogr. 2008 Aug 1;41(Pt 4):811-814. doi: 10.1107/S0021889808015616. Epub 2008 Jul 1.

本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
Structural genomics of pathogenic protozoa: an overview.
Methods Mol Biol. 2008;426:497-513. doi: 10.1007/978-1-60327-058-8_33.
3
Optimal description of a protein structure in terms of multiple groups undergoing TLS motion.
Acta Crystallogr D Biol Crystallogr. 2006 Apr;62(Pt 4):439-50. doi: 10.1107/S0907444906005270. Epub 2006 Mar 18.
4
Coot: model-building tools for molecular graphics.
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32. doi: 10.1107/S0907444904019158. Epub 2004 Nov 26.
5
Refinement of macromolecular structures by the maximum-likelihood method.
Acta Crystallogr D Biol Crystallogr. 1997 May 1;53(Pt 3):240-55. doi: 10.1107/S0907444996012255.
6
A facile method for high-throughput co-expression of protein pairs.
Mol Cell Proteomics. 2004 Sep;3(9):934-8. doi: 10.1074/mcp.T400008-MCP200. Epub 2004 Jul 7.
7
CE-MC: a multiple protein structure alignment server.
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W100-3. doi: 10.1093/nar/gkh464.
8
Automated protein crystal structure determination using ELVES.
Proc Natl Acad Sci U S A. 2004 Feb 10;101(6):1537-42. doi: 10.1073/pnas.0306241101. Epub 2004 Jan 29.
9
SOLVE and RESOLVE: automated structure solution and density modification.
Methods Enzymol. 2003;374:22-37. doi: 10.1016/S0076-6879(03)74002-6.
10
An improved protocol for rapid freezing of protein samples for long-term storage.
Acta Crystallogr D Biol Crystallogr. 2004 Jan;60(Pt 1):203-4. doi: 10.1107/s0907444903024491. Epub 2003 Dec 18.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验