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2
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3
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4
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5
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Nucleic Acids Res. 2007 Jul;35(Web Server issue):W585-7. doi: 10.1093/nar/gkm259. Epub 2007 May 21.
6
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Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4337-41. doi: 10.1073/pnas.0607879104. Epub 2007 Mar 5.
7
MemO: a consensus approach to the annotation of a protein's membrane organization.
In Silico Biol. 2006;6(5):387-99.
8
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BMC Bioinformatics. 2006 Dec 18;7 Suppl 5(Suppl 5):S3. doi: 10.1186/1471-2105-7-S5-S3.
9
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Plant Cell. 2006 Nov;18(11):3182-200. doi: 10.1105/tpc.105.036400. Epub 2006 Nov 30.
10
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